Variant report

Variant	rs60887312
Chromosome Location	chr2:86239289-86239290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2278537	0.83[AFR][1000 genomes]
rs34302587	0.89[AFR][1000 genomes]
rs3770086	0.83[AFR][1000 genomes]
rs3770091	0.83[AFR][1000 genomes]
rs56673339	0.83[AFR][1000 genomes]
rs57906735	0.83[AFR][1000 genomes]
rs58403969	0.83[AFR][1000 genomes]
rs58614836	0.93[AFR][1000 genomes]
rs61185790	0.83[AFR][1000 genomes]
rs6547656	0.83[AFR][1000 genomes]
rs6547657	0.83[AFR][1000 genomes]
rs6704777	0.83[AFR][1000 genomes]
rs6708146	0.83[AFR][1000 genomes]
rs6712535	0.83[AFR][1000 genomes]
rs6712576	0.83[AFR][1000 genomes]
rs6724612	0.89[AFR][1000 genomes]
rs6737211	0.83[AFR][1000 genomes]
rs6741815	0.83[AFR][1000 genomes]
rs6741832	0.83[AFR][1000 genomes]
rs6755224	0.83[AFR][1000 genomes]
rs6755246	0.86[AFR][1000 genomes]
rs7557349	0.83[AFR][1000 genomes]
rs7569577	0.83[AFR][1000 genomes]
rs7572206	0.83[AFR][1000 genomes]
rs7582484	0.83[AFR][1000 genomes]
rs7599656	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86238200-86239800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:86238400-86239800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:86238400-86239800	Enhancers	Placenta	Placenta
4	chr2:86238400-86240200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:86238400-86240200	Enhancers	Fetal Muscle Leg	muscle
6	chr2:86238800-86239400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:86238800-86239600	Enhancers	Fetal Stomach	stomach
8	chr2:86238800-86239800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:86238800-86240200	Enhancers	Left Ventricle	heart
10	chr2:86239000-86239400	Weak transcription	Pancreas	Pancrea
11	chr2:86239200-86239400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:86239200-86239400	Enhancers	Right Atrium	heart
13	chr2:86239200-86240400	Enhancers	Fetal Muscle Trunk	muscle
14	chr2:86239200-86240600	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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