Variant report

Variant	rs6755246
Chromosome Location	chr2:86243963-86243964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86219842..86222798-chr2:86242564..86244317,2	K562	blood:
2	chr2:86243376..86246282-chr2:86255772..86258201,2	K562	blood:

Variant related genes	Relation type
ENSG00000068654	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs2278086	0.93[AFR][1000 genomes]
rs2278537	0.96[AFR][1000 genomes]
rs34302587	0.89[AFR][1000 genomes]
rs35093541	0.93[AFR][1000 genomes]
rs36051710	0.93[AFR][1000 genomes]
rs3770086	0.96[AFR][1000 genomes]
rs3770091	0.96[AFR][1000 genomes]
rs56673339	0.96[AFR][1000 genomes]
rs57906735	0.96[AFR][1000 genomes]
rs58403969	0.96[AFR][1000 genomes]
rs58614836	0.93[AFR][1000 genomes]
rs59947468	0.86[AFR][1000 genomes]
rs60719866	0.93[AFR][1000 genomes]
rs60887312	0.86[AFR][1000 genomes]
rs61185790	0.96[AFR][1000 genomes]
rs6547656	0.96[AFR][1000 genomes]
rs6547657	0.96[AFR][1000 genomes]
rs6704777	0.96[AFR][1000 genomes]
rs6708146	0.96[AFR][1000 genomes]
rs6712535	0.96[AFR][1000 genomes]
rs6712576	0.96[AFR][1000 genomes]
rs6724612	0.89[AFR][1000 genomes]
rs6737211	0.96[AFR][1000 genomes]
rs6741815	0.96[AFR][1000 genomes]
rs6741832	0.96[AFR][1000 genomes]
rs6755224	0.96[AFR][1000 genomes]
rs73943757	1.00[AMR][1000 genomes]
rs7557349	0.96[AFR][1000 genomes]
rs7569577	0.96[AFR][1000 genomes]
rs7572206	0.96[AFR][1000 genomes]
rs7582484	0.96[AFR][1000 genomes]
rs7599656	0.96[AFR][1000 genomes]
rs7606062	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86239600-86244000	Weak transcription	Pancreas	Pancrea
2	chr2:86242000-86244000	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:86242200-86246200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:86242200-86251200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:86242400-86245200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:86242600-86245800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:86242600-86246800	Enhancers	Fetal Thymus	thymus
8	chr2:86243000-86244000	Enhancers	Primary T cells from cord blood	blood
9	chr2:86243200-86244200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:86243200-86244400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr2:86243200-86244600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:86243200-86244600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr2:86243400-86244600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:86243400-86244600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr2:86243400-86244800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr2:86243400-86244800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr2:86243400-86245000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr2:86243600-86244600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:86243600-86245000	Enhancers	Fetal Muscle Trunk	muscle
20	chr2:86243600-86246400	Enhancers	Thymus	Thymus
21	chr2:86243600-86246600	Enhancers	GM12878-XiMat	blood
22	chr2:86243800-86244000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr2:86243800-86244000	Weak transcription	Right Atrium	heart
24	chr2:86243800-86244000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr2:86243800-86244000	Enhancers	K562	blood
26	chr2:86243800-86244200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr2:86243800-86244400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:86243800-86244400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr2:86243800-86244400	Enhancers	Duodenum Mucosa	Duodenum
30	chr2:86243800-86244400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr2:86243800-86244400	Enhancers	Spleen	Spleen
32	chr2:86243800-86244400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr2:86243800-86244600	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr2:86243800-86244600	Enhancers	Placenta	Placenta
35	chr2:86243800-86244600	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr2:86243800-86244800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr2:86243800-86245000	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr2:86243800-86245400	Enhancers	Stomach Mucosa	stomach
39	chr2:86243800-86245600	Enhancers	Lung	lung
40	chr2:86243800-86245800	Enhancers	Adipose Nuclei	Adipose
41	chr2:86243800-86246200	Enhancers	Fetal Muscle Leg	muscle
42	chr2:86243800-86246200	Enhancers	Psoas Muscle	Psoas

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