Variant report

Variant	rs60898313
Chromosome Location	chr4:45085078-45085079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10027510	1.00[AMR][1000 genomes]
rs55848062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55870736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56230679	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814920	1.00[AMR][1000 genomes]
rs73814921	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814928	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814935	1.00[AFR][1000 genomes]
rs73814936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814938	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814939	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814946	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3361192	chr4:45084732-45085183	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45082800-45085600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:45084600-45085800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:45085000-45086200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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