Variant report

Variant	rs73814953
Chromosome Location	chr4:45096371-45096372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10027510	1.00[AMR][1000 genomes]
rs55848062	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55870736	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56230679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60898313	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814920	1.00[AMR][1000 genomes]
rs73814921	1.00[AMR][1000 genomes]
rs73814928	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814934	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814935	0.91[AFR][1000 genomes]
rs73814936	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814940	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814943	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814944	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814946	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73814950	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45095200-45096400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr4:45096000-45104800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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