Variant report
| Variant | rs73814928 |
|---|---|
| Chromosome Location | chr4:45082365-45082366 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:56707875..56710870-chr4:45081428..45084145,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000212195 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10027510 | 1.00[AMR][1000 genomes] |
| rs55848062 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55870736 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56230679 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60898313 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814920 | 1.00[AMR][1000 genomes] |
| rs73814921 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814934 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814935 | 0.91[AFR][1000 genomes] |
| rs73814936 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814938 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814939 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814940 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814941 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814943 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814944 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814945 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814946 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814950 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73814953 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531944 | chr4:44299343-45200700 | Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014327 | chr4:44735209-45218149 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv878979 | chr4:44871931-45102488 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv829919 | chr4:45069901-45253808 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:45081200-45082600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
