Variant report

Variant	rs60904962
Chromosome Location	chr5:94770798-94770799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10428568	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56853494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58269886	1.00[AMR][1000 genomes]
rs59196376	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6556873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143928	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147988	1.00[AMR][1000 genomes]
rs7708307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94768600-94776000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:94770200-94771000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:94770600-94771000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:94770600-94771000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:94770600-94771200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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