Variant report

Variant	rs58269886
Chromosome Location	chr5:94775025-94775026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10428568	1.00[AMR][1000 genomes]
rs11951853	0.94[AFR][1000 genomes]
rs11956897	0.82[AFR][1000 genomes]
rs17084844	0.88[AFR][1000 genomes]
rs17084888	0.82[AFR][1000 genomes]
rs17084925	0.94[AFR][1000 genomes]
rs56742088	0.94[AFR][1000 genomes]
rs56853494	1.00[AMR][1000 genomes]
rs57520226	0.94[AFR][1000 genomes]
rs58364348	0.94[AFR][1000 genomes]
rs59196376	1.00[AMR][1000 genomes]
rs59601824	0.94[AFR][1000 genomes]
rs59728284	0.82[AFR][1000 genomes]
rs60904962	1.00[AMR][1000 genomes]
rs6556873	1.00[AMR][1000 genomes]
rs73141958	1.00[AMR][1000 genomes]
rs73141959	1.00[AMR][1000 genomes]
rs73143928	1.00[AMR][1000 genomes]
rs73143940	1.00[AMR][1000 genomes]
rs73147905	0.82[AFR][1000 genomes]
rs73147915	0.82[AFR][1000 genomes]
rs73147917	0.82[AFR][1000 genomes]
rs73147919	0.82[AFR][1000 genomes]
rs73147929	0.82[AFR][1000 genomes]
rs73147967	0.82[AFR][1000 genomes]
rs73147968	0.88[AFR][1000 genomes]
rs73147970	0.94[AFR][1000 genomes]
rs73147988	1.00[AMR][1000 genomes]
rs7708307	1.00[AMR][1000 genomes]
rs7708692	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94768600-94776000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:94771200-94775600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:94773400-94775400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:94773600-94775600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:94773800-94775200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:94773800-94775600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:94774000-94775600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:94774200-94775200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:94774200-94776200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:94774200-94776200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:94775000-94775600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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