Variant report

Variant	rs59601824
Chromosome Location	chr5:94939917-94939918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11949777	0.83[AFR][1000 genomes]
rs11951564	0.83[AFR][1000 genomes]
rs11951853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956897	0.88[AFR][1000 genomes]
rs17084844	0.94[AFR][1000 genomes]
rs17084856	1.00[AMR][1000 genomes]
rs17084871	1.00[AMR][1000 genomes]
rs17084888	0.88[AFR][1000 genomes]
rs17084908	0.83[AFR][1000 genomes]
rs17084925	1.00[AFR][1000 genomes]
rs2881774	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4645348	1.00[AMR][1000 genomes]
rs56742088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57414975	0.83[AFR][1000 genomes]
rs57520226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58269886	0.94[AFR][1000 genomes]
rs58364348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59728284	0.88[AFR][1000 genomes]
rs60632886	0.83[AFR][1000 genomes]
rs73147905	0.88[AFR][1000 genomes]
rs73147912	1.00[AMR][1000 genomes]
rs73147915	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147917	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147919	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147928	1.00[AMR][1000 genomes]
rs73147929	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147938	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147942	1.00[AMR][1000 genomes]
rs73147967	0.88[AFR][1000 genomes]
rs73147968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7708692	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94900400-94942400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:94905000-94940600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:94912800-94943400	Weak transcription	Fetal Intestine Small	intestine
4	chr5:94917400-94940800	Weak transcription	Fetal Brain Male	brain
5	chr5:94926400-94941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:94926800-94942000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:94927000-94940800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:94927000-94948800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:94927000-94954200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:94927000-94954200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:94927600-94951800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:94927800-94941200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:94927800-94952200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:94928200-94952200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:94928400-94948600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:94928600-94941800	Weak transcription	HMEC	breast
17	chr5:94933600-94948600	Weak transcription	Pancreas	Pancrea
18	chr5:94935000-94940000	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:94935200-94941000	Weak transcription	Fetal Stomach	stomach
20	chr5:94935200-94942000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr5:94937000-94940800	Weak transcription	Osteobl	bone
22	chr5:94937000-94941600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:94937000-94943400	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:94937200-94940800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:94937200-94948200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:94937400-94945400	Weak transcription	Fetal Lung	lung
27	chr5:94937400-94948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:94937600-94952200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:94937800-94940600	Weak transcription	Fetal Intestine Large	intestine
30	chr5:94937800-94941800	Weak transcription	Ovary	ovary
31	chr5:94937800-94942200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:94937800-94943200	Weak transcription	Primary B cells from cord blood	blood
33	chr5:94937800-94943400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:94937800-94945600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr5:94938000-94942200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr5:94938000-94943000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr5:94938000-94948400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:94938000-94952400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr5:94938200-94954400	Weak transcription	Primary T cells from cord blood	blood
40	chr5:94938400-94940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr5:94938800-94941400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr5:94938800-94948400	Weak transcription	Dnd41	blood
43	chr5:94939200-94941200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr5:94939400-94941000	Weak transcription	Left Ventricle	heart
45	chr5:94939400-94942000	Weak transcription	Liver	Liver

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