Variant report

Variant	rs17084856
Chromosome Location	chr5:94838263-94838264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94831708..94834724-chr5:94836211..94838681,3	K562	blood:
2	chr5:94835766..94839248-chr5:94841208..94845104,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10064488	1.00[ASN][1000 genomes]
rs11949777	0.84[AFR][1000 genomes]
rs11951853	1.00[AMR][1000 genomes]
rs11953259	1.00[ASN][1000 genomes]
rs17084844	0.84[AFR][1000 genomes]
rs17084871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17084908	0.84[AFR][1000 genomes]
rs2881774	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4645348	1.00[AMR][1000 genomes]
rs56742088	1.00[AMR][1000 genomes]
rs57414975	0.84[AFR][1000 genomes]
rs57520226	1.00[AMR][1000 genomes]
rs58364348	1.00[AMR][1000 genomes]
rs59601824	1.00[AMR][1000 genomes]
rs60632886	0.84[AFR][1000 genomes]
rs73141949	1.00[ASN][1000 genomes]
rs73145988	1.00[ASN][1000 genomes]
rs73147905	0.89[AFR][1000 genomes]
rs73147912	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73147915	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147917	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147919	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73147929	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147938	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147942	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73147968	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147970	1.00[AMR][1000 genomes]
rs7703196	1.00[ASN][1000 genomes]
rs7708692	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598954	chr5:94783175-94859599	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94815400-94853200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:94817200-94849000	Weak transcription	Small Intestine	intestine
4	chr5:94817400-94865600	Strong transcription	Osteobl	bone
5	chr5:94818000-94882400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:94822400-94839600	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:94822400-94840600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:94822400-94847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:94823200-94839600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:94824400-94862200	Weak transcription	Colonic Mucosa	Colon
11	chr5:94824800-94843800	Strong transcription	Liver	Liver
12	chr5:94824800-94847200	Weak transcription	Brain Substantia Nigra	brain
13	chr5:94824800-94866000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:94825200-94866000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:94825400-94839800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:94825400-94852200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr5:94825600-94839600	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr5:94826000-94839600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:94826000-94847400	Weak transcription	Fetal Heart	heart
22	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr5:94827200-94839800	Strong transcription	Primary T cells from cord blood	blood
25	chr5:94827200-94848800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:94827200-94865600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:94827200-94866800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:94827400-94848800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr5:94828000-94839600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:94828000-94847600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr5:94828600-94839600	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr5:94828600-94873600	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr5:94828800-94839600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr5:94828800-94862600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr5:94828800-94885800	Strong transcription	Fetal Thymus	thymus
37	chr5:94829000-94844200	Weak transcription	K562	blood
38	chr5:94829200-94866200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr5:94831000-94839600	Strong transcription	NH-A	brain
40	chr5:94831400-94868400	Strong transcription	Fetal Intestine Large	intestine
41	chr5:94831600-94856200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:94832000-94839600	Strong transcription	Dnd41	blood
43	chr5:94832000-94839600	Strong transcription	HSMM	muscle
44	chr5:94833000-94840800	Strong transcription	HUVEC	blood vessel
45	chr5:94833200-94847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr5:94833200-94848200	Weak transcription	Hela-S3	cervix
47	chr5:94834000-94839200	Strong transcription	GM12878-XiMat	blood
48	chr5:94834200-94845000	Weak transcription	HepG2	liver
49	chr5:94834400-94838600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr5:94834400-94839000	Weak transcription	Fetal Stomach	stomach

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