The 2.0 version of rSNPBase

Variant report

Variant rs11953259
Chromosome Location chr5:94902716-94902717
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:94891800-94902800 Weak transcription Fetal Muscle Trunk muscle
2 chr5:94892000-94906200 Weak transcription Brain Hippocampus Middle brain
3 chr5:94892200-94903000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr5:94892200-94904400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr5:94892200-94904400 Weak transcription Aorta Aorta
6 chr5:94892200-94906000 Weak transcription Brain Inferior Temporal Lobe brain
7 chr5:94892200-94906800 Weak transcription Fetal Kidney kidney
8 chr5:94892200-94907200 Weak transcription Rectal Smooth Muscle rectum
9 chr5:94892200-94907400 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr5:94892200-94934400 Weak transcription Fetal Stomach stomach
11 chr5:94892200-94936600 Weak transcription Fetal Lung lung
12 chr5:94892400-94902800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr5:94892400-94902800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr5:94892400-94902800 Weak transcription Left Ventricle heart
15 chr5:94892400-94902800 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr5:94892400-94902800 Weak transcription GM12878-XiMat blood
17 chr5:94892400-94903000 Weak transcription Primary B cells from peripheral blood blood
18 chr5:94892400-94903000 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr5:94892400-94903000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr5:94892400-94903400 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr5:94892400-94903400 Weak transcription Fetal Intestine Large intestine
22 chr5:94892400-94904200 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr5:94892400-94904400 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr5:94892400-94904400 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr5:94892400-94905600 Weak transcription H9 Cell Line embryonic stem cell
26 chr5:94892400-94905800 Weak transcription Brain Cingulate Gyrus brain
27 chr5:94892400-94906000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr5:94892400-94906600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr5:94892400-94907600 Weak transcription Colon Smooth Muscle Colon
30 chr5:94892400-94908800 Weak transcription HepG2 liver
31 chr5:94892400-94910200 Weak transcription Duodenum Mucosa Duodenum
32 chr5:94892400-94911200 Weak transcription HMEC breast
33 chr5:94892400-94921000 Weak transcription Psoas Muscle Psoas
34 chr5:94892400-94922400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr5:94892400-94926000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr5:94892400-94926200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr5:94892400-94926200 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr5:94892400-94926200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
39 chr5:94892400-94926600 Weak transcription NH-A brain
40 chr5:94892400-94937200 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr5:94892600-94903000 Weak transcription Fetal Thymus thymus
42 chr5:94892600-94907800 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr5:94893000-94902800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr5:94893000-94904200 Weak transcription Ovary ovary
45 chr5:94893000-94904400 Weak transcription Dnd41 blood
46 chr5:94894000-94908400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
47 chr5:94894000-94919000 Weak transcription Primary T killer memory cells from peripheral blood blood
48 chr5:94898200-94926000 Weak transcription Thymus Thymus
49 chr5:94898400-94906600 Weak transcription Brain Angular Gyrus brain
50 chr5:94900200-94908000 Weak transcription Placenta Placenta

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Last update: Aug 31, 2015