Variant report

Variant	rs7703196
Chromosome Location	chr5:94900543-94900544
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94897161..94899128-chr5:94900453..94902701,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10064488	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11949777	1.00[AMR][1000 genomes]
rs11951564	1.00[AMR][1000 genomes]
rs11951853	1.00[MEX][hapmap]
rs11953259	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11958573	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084856	1.00[ASN][1000 genomes]
rs17084871	1.00[ASN][1000 genomes]
rs17084908	1.00[AMR][1000 genomes]
rs17084925	1.00[MEX][hapmap]
rs57414975	1.00[AMR][1000 genomes]
rs57901676	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59728284	1.00[AMR][1000 genomes]
rs6556873	1.00[MEX][hapmap]
rs73141949	1.00[ASN][1000 genomes]
rs73145988	1.00[ASN][1000 genomes]
rs73147912	1.00[ASN][1000 genomes]
rs73147928	1.00[ASN][1000 genomes]
rs73147942	1.00[ASN][1000 genomes]
rs73147967	1.00[AMR][1000 genomes]
rs7708307	1.00[MEX][hapmap]
rs7719748	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830408	chr5:94894032-94915995	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7703196	ABP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94891800-94902800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:94892000-94906200	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:94892200-94902000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:94892200-94902400	Weak transcription	Adipose Nuclei	Adipose
5	chr5:94892200-94903000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:94892200-94904400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:94892200-94904400	Weak transcription	Aorta	Aorta
8	chr5:94892200-94906000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:94892200-94906800	Weak transcription	Fetal Kidney	kidney
10	chr5:94892200-94907200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:94892200-94907400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:94892200-94934400	Weak transcription	Fetal Stomach	stomach
13	chr5:94892200-94936600	Weak transcription	Fetal Lung	lung
14	chr5:94892400-94901400	Weak transcription	Primary T cells from cord blood	blood
15	chr5:94892400-94902000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:94892400-94902000	Weak transcription	Liver	Liver
17	chr5:94892400-94902200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:94892400-94902400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr5:94892400-94902400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:94892400-94902400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr5:94892400-94902600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:94892400-94902600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:94892400-94902600	Weak transcription	Primary B cells from cord blood	blood
24	chr5:94892400-94902600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:94892400-94902800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr5:94892400-94902800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:94892400-94902800	Weak transcription	Left Ventricle	heart
28	chr5:94892400-94902800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr5:94892400-94902800	Weak transcription	GM12878-XiMat	blood
30	chr5:94892400-94903000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr5:94892400-94903000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr5:94892400-94903000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:94892400-94903400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:94892400-94903400	Weak transcription	Fetal Intestine Large	intestine
35	chr5:94892400-94904200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr5:94892400-94904400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr5:94892400-94904400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:94892400-94905600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr5:94892400-94905800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr5:94892400-94906000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:94892400-94906600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:94892400-94907600	Weak transcription	Colon Smooth Muscle	Colon
43	chr5:94892400-94908800	Weak transcription	HepG2	liver
44	chr5:94892400-94910200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr5:94892400-94911200	Weak transcription	HMEC	breast
46	chr5:94892400-94921000	Weak transcription	Psoas Muscle	Psoas
47	chr5:94892400-94922400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr5:94892400-94926000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr5:94892400-94926200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr5:94892400-94926200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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