Variant report

Variant	rs17084871
Chromosome Location	chr5:94860353-94860354
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10064488	1.00[ASN][1000 genomes]
rs11949777	0.84[AFR][1000 genomes]
rs11951853	1.00[AMR][1000 genomes]
rs11953259	1.00[ASN][1000 genomes]
rs17084844	0.84[AFR][1000 genomes]
rs17084856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17084908	0.84[AFR][1000 genomes]
rs2881774	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4645348	1.00[AMR][1000 genomes]
rs56742088	1.00[AMR][1000 genomes]
rs57414975	0.84[AFR][1000 genomes]
rs57520226	1.00[AMR][1000 genomes]
rs58364348	1.00[AMR][1000 genomes]
rs59601824	1.00[AMR][1000 genomes]
rs60632886	0.84[AFR][1000 genomes]
rs73141949	1.00[ASN][1000 genomes]
rs73145988	1.00[ASN][1000 genomes]
rs73147905	0.89[AFR][1000 genomes]
rs73147912	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73147915	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147917	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147919	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73147929	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147938	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147942	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73147968	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147970	1.00[AMR][1000 genomes]
rs7703196	1.00[ASN][1000 genomes]
rs7708692	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94817400-94865600	Strong transcription	Osteobl	bone
3	chr5:94818000-94882400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:94824400-94862200	Weak transcription	Colonic Mucosa	Colon
5	chr5:94824800-94866000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:94825200-94866000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr5:94827200-94865600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:94827200-94866800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:94828600-94873600	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:94828800-94862600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:94828800-94885800	Strong transcription	Fetal Thymus	thymus
17	chr5:94829200-94866200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:94831400-94868400	Strong transcription	Fetal Intestine Large	intestine
19	chr5:94835200-94864800	Weak transcription	Spleen	Spleen
20	chr5:94835200-94881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:94835400-94868000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:94836200-94866400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:94836600-94860800	Strong transcription	Placenta	Placenta
24	chr5:94836600-94861000	Strong transcription	Duodenum Mucosa	Duodenum
25	chr5:94836600-94867600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:94837000-94866600	Strong transcription	Adipose Nuclei	Adipose
27	chr5:94841400-94883400	Strong transcription	Primary B cells from cord blood	blood
28	chr5:94841600-94867600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:94841800-94886000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr5:94842000-94866000	Strong transcription	NH-A	brain
31	chr5:94842000-94873600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr5:94842000-94884800	Strong transcription	Dnd41	blood
33	chr5:94842200-94882000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr5:94842200-94886000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr5:94843800-94870200	Strong transcription	HUVEC	blood vessel
36	chr5:94845200-94864200	Weak transcription	Aorta	Aorta
37	chr5:94845400-94861600	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr5:94845600-94879800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:94846400-94867600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr5:94846600-94881000	Weak transcription	Gastric	stomach
41	chr5:94847200-94865800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:94847400-94866200	Strong transcription	HSMM	muscle
43	chr5:94847400-94890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr5:94848000-94862800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:94848200-94867000	Weak transcription	Fetal Heart	heart
46	chr5:94849200-94890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr5:94849400-94871400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr5:94849800-94862000	Weak transcription	NHEK	skin
49	chr5:94849800-94872000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr5:94849800-94878200	Weak transcription	Fetal Intestine Small	intestine

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