Variant report

Variant	rs73147919
Chromosome Location	chr5:94851769-94851770
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11949777	0.94[AFR][1000 genomes]
rs11951564	0.83[AFR][1000 genomes]
rs11951853	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084844	0.94[AFR][1000 genomes]
rs17084856	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084871	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084888	0.88[AFR][1000 genomes]
rs17084908	0.94[AFR][1000 genomes]
rs17084925	0.88[AFR][1000 genomes]
rs2881774	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4645348	1.00[AMR][1000 genomes]
rs56742088	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57414975	0.94[AFR][1000 genomes]
rs57520226	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58269886	0.82[AFR][1000 genomes]
rs58364348	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59601824	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60632886	0.94[AFR][1000 genomes]
rs73147905	1.00[AFR][1000 genomes]
rs73147912	1.00[AMR][1000 genomes]
rs73147915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147928	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147938	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147942	1.00[AMR][1000 genomes]
rs73147967	0.88[AFR][1000 genomes]
rs73147968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147970	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7708692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598954	chr5:94783175-94859599	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94815400-94853200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:94817400-94865600	Strong transcription	Osteobl	bone
4	chr5:94818000-94882400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:94824400-94862200	Weak transcription	Colonic Mucosa	Colon
6	chr5:94824800-94866000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:94825200-94866000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:94825400-94852200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:94827200-94865600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:94827200-94866800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:94828600-94873600	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr5:94828800-94862600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:94828800-94885800	Strong transcription	Fetal Thymus	thymus
19	chr5:94829200-94866200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:94831400-94868400	Strong transcription	Fetal Intestine Large	intestine
21	chr5:94831600-94856200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:94835200-94864800	Weak transcription	Spleen	Spleen
23	chr5:94835200-94881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:94835400-94868000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:94836200-94866400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr5:94836600-94860800	Strong transcription	Placenta	Placenta
27	chr5:94836600-94861000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr5:94836600-94867600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:94837000-94866600	Strong transcription	Adipose Nuclei	Adipose
30	chr5:94837400-94856200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr5:94839400-94852800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr5:94841400-94855800	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr5:94841400-94883400	Strong transcription	Primary B cells from cord blood	blood
34	chr5:94841600-94867600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:94841800-94886000	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr5:94842000-94853600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr5:94842000-94854800	Strong transcription	GM12878-XiMat	blood
38	chr5:94842000-94858200	Strong transcription	Fetal Lung	lung
39	chr5:94842000-94866000	Strong transcription	NH-A	brain
40	chr5:94842000-94873600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr5:94842000-94884800	Strong transcription	Dnd41	blood
42	chr5:94842200-94851800	Strong transcription	Fetal Muscle Leg	muscle
43	chr5:94842200-94854600	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr5:94842200-94859000	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr5:94842200-94882000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr5:94842200-94886000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr5:94842600-94852200	Weak transcription	Psoas Muscle	Psoas
48	chr5:94843200-94853200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:94843200-94853800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr5:94843600-94859000	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links