Variant report

Variant	rs73143928
Chromosome Location	chr5:94777546-94777547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10428568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56853494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58269886	1.00[AMR][1000 genomes]
rs59196376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60904962	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6556873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147988	1.00[AMR][1000 genomes]
rs7708307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94776400-94781400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:94776600-94778000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:94776800-94778000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:94776800-94778000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:94776800-94781800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:94776800-94782000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:94777000-94777600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:94777000-94778200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:94777000-94781200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:94777000-94798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:94777400-94778000	Enhancers	HepG2	liver
12	chr5:94777400-94778200	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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