Variant report

Variant	rs60911295
Chromosome Location	chr6:54062488-54062489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1340666	0.91[AFR][1000 genomes]
rs59188910	1.00[AFR][1000 genomes]
rs60583787	1.00[AFR][1000 genomes]
rs61237050	0.91[AFR][1000 genomes]
rs73741435	1.00[AFR][1000 genomes]
rs73741440	1.00[AFR][1000 genomes]
rs73741443	1.00[AFR][1000 genomes]
rs73741446	1.00[AFR][1000 genomes]
rs73741447	1.00[AFR][1000 genomes]
rs73741448	1.00[AFR][1000 genomes]
rs73741449	1.00[AFR][1000 genomes]
rs73741450	1.00[AFR][1000 genomes]
rs73741451	1.00[AFR][1000 genomes]
rs73741452	1.00[AFR][1000 genomes]
rs73741453	1.00[AFR][1000 genomes]
rs73741460	1.00[AFR][1000 genomes]
rs73741465	1.00[AFR][1000 genomes]
rs73741466	1.00[AFR][1000 genomes]
rs73741468	1.00[AFR][1000 genomes]
rs73741477	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54045800-54069200	Weak transcription	Fetal Heart	heart
3	chr6:54047200-54069600	Weak transcription	Right Ventricle	heart
4	chr6:54047400-54069600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:54055200-54069600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:54058800-54101000	Weak transcription	Left Ventricle	heart
7	chr6:54062200-54063200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:54062200-54063600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:54062200-54064000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:54062200-54064000	Enhancers	Fetal Intestine Small	intestine
11	chr6:54062200-54064800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:54062400-54062800	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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