Variant report

Variant	rs73741435
Chromosome Location	chr6:53980260-53980261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1340666	0.91[AFR][1000 genomes]
rs59188910	1.00[AFR][1000 genomes]
rs60583787	1.00[AFR][1000 genomes]
rs60911295	1.00[AFR][1000 genomes]
rs61237050	0.91[AFR][1000 genomes]
rs73741440	1.00[AFR][1000 genomes]
rs73741443	1.00[AFR][1000 genomes]
rs73741446	1.00[AFR][1000 genomes]
rs73741447	1.00[AFR][1000 genomes]
rs73741448	1.00[AFR][1000 genomes]
rs73741449	1.00[AFR][1000 genomes]
rs73741450	1.00[AFR][1000 genomes]
rs73741451	1.00[AFR][1000 genomes]
rs73741452	1.00[AFR][1000 genomes]
rs73741453	1.00[AFR][1000 genomes]
rs73741460	1.00[AFR][1000 genomes]
rs73741465	1.00[AFR][1000 genomes]
rs73741466	1.00[AFR][1000 genomes]
rs73741468	1.00[AFR][1000 genomes]
rs73741477	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758055	chr6:53839373-53996093	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2759431	chr6:53839373-54007349	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv7901	chr6:53914491-53981080	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv885885	chr6:53920024-54046264	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2757169	chr6:53951857-54007349	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv885886	chr6:53956877-54009067	Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv885887	chr6:53961784-54046264	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53972800-53989400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:53976200-53980400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:53976800-53989200	Weak transcription	Left Ventricle	heart
4	chr6:53977400-53980800	Weak transcription	Fetal Heart	heart
5	chr6:53977600-53992400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:53979800-53981000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:53979800-53981200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:53980000-53980600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:53980000-53981200	Enhancers	HMEC	breast
10	chr6:53980000-53981200	Enhancers	NHEK	skin
11	chr6:53980000-53982600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:53980000-53989400	Weak transcription	Psoas Muscle	Psoas

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