Variant report
| Variant | rs60913420 |
|---|---|
| Chromosome Location | chr22:30906303-30906304 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:30820356..30823347-chr22:30905051..30906712,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000242114 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11913993 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11914026 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11914187 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11914198 | 0.86[AFR][1000 genomes] |
| rs16988746 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2097870 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56968636 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58978536 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60357117 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7287647 | 0.86[AFR][1000 genomes] |
| rs73394208 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73394212 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73394239 | 0.86[AFR][1000 genomes] |
| rs73394252 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829171 | chr22:30598030-31043578 | Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
| 2 | nsv915818 | chr22:30708245-31346302 | Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
| 3 | esv3413089 | chr22:30888110-30921604 | ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:30903600-30906800 | Weak transcription | HepG2 | liver |
