Variant report

Variant	rs73394208
Chromosome Location	chr22:30910133-30910134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11913993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11914026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11914187	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11914198	0.88[AFR][1000 genomes]
rs16988746	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2097870	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56968636	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58978536	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60357117	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60913420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7287647	0.88[AFR][1000 genomes]
rs73394212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394239	0.88[AFR][1000 genomes]
rs73394252	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv3413089	chr22:30888110-30921604	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30910000-30910200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:30910000-30910800	Enhancers	Liver	Liver
3	chr22:30910000-30912400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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