Variant report

Variant	rs60916377
Chromosome Location	chr8:35914147-35914148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57491609	1.00[AFR][1000 genomes]
rs73576363	1.00[AFR][1000 genomes]
rs73576383	1.00[AFR][1000 genomes]
rs73578372	1.00[AFR][1000 genomes]
rs73586185	1.00[AFR][1000 genomes]
rs73588136	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv831286	chr8:35802388-35950586	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35910400-35916000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:35911600-35914600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:35911600-35916000	Weak transcription	HMEC	breast
4	chr8:35912400-35914400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:35913000-35914200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:35913200-35914200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:35913200-35915000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:35913400-35914200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr8:35913400-35914200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:35913600-35919600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:35914000-35914400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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