Variant report

Variant	rs60918529
Chromosome Location	chr4:152614820-152614821
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:152608557..152610201-chr4:152614503..152616789,2	MCF-7	breast:
2	chr4:152609295..152612120-chr4:152614699..152616542,2	K562	blood:
3	chr4:152610620..152612985-chr4:152613774..152616542,2	K562	blood:

Variant related genes	Relation type
ENSG00000059691	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59268491	1.00[AMR][1000 genomes]
rs59462421	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59843173	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61497752	1.00[AMR][1000 genomes]
rs61611728	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956921	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962934	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7692744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4551	chr4:152582617-152627367	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
2	chr4:152585600-152628600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152585800-152640400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:152589200-152619200	Weak transcription	Dnd41	blood
5	chr4:152591200-152646800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:152592600-152636400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:152596200-152624000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:152596400-152627800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:152596400-152628600	Weak transcription	Colonic Mucosa	Colon
10	chr4:152596400-152640600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:152598400-152648200	Weak transcription	HMEC	breast
12	chr4:152598800-152620800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:152599000-152637200	Weak transcription	GM12878-XiMat	blood
14	chr4:152600600-152626200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr4:152603000-152623200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:152604800-152620600	Weak transcription	Pancreas	Pancrea
17	chr4:152605400-152628600	Weak transcription	Aorta	Aorta
18	chr4:152606200-152617600	Enhancers	Fetal Heart	heart
19	chr4:152608000-152615000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:152608000-152615000	Enhancers	HSMM	muscle
21	chr4:152608000-152617800	Enhancers	Fetal Brain Male	brain
22	chr4:152608400-152621200	Weak transcription	Ovary	ovary
23	chr4:152608800-152622200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:152609000-152622800	Weak transcription	A549	lung
25	chr4:152609200-152622200	Weak transcription	Placenta	Placenta
26	chr4:152609200-152640200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:152609600-152616800	Enhancers	Fetal Muscle Leg	muscle
28	chr4:152609600-152617800	Weak transcription	Brain Substantia Nigra	brain
29	chr4:152609600-152621600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr4:152609600-152622000	Weak transcription	Thymus	Thymus
31	chr4:152609600-152628800	Weak transcription	HepG2	liver
32	chr4:152609600-152640400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:152609800-152618200	Weak transcription	Primary B cells from cord blood	blood
34	chr4:152609800-152619200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:152609800-152620600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr4:152609800-152621000	Weak transcription	Brain Angular Gyrus	brain
37	chr4:152609800-152622400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:152609800-152646200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr4:152610000-152619200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:152610200-152619600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr4:152610200-152620800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr4:152610200-152621000	Weak transcription	Brain Anterior Caudate	brain
43	chr4:152610400-152620600	Weak transcription	Liver	Liver
44	chr4:152610600-152621200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr4:152610800-152617600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:152610800-152618400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:152610800-152619200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr4:152610800-152621800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr4:152611000-152617600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:152611000-152620400	Weak transcription	Lung	lung

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