Variant report

Variant	rs72956921
Chromosome Location	chr4:152580010-152580011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:140376454..140378009-chr4:152578299..152580663,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59268491	1.00[AMR][1000 genomes]
rs59462421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59843173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60918529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61497752	1.00[AMR][1000 genomes]
rs61611728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72962934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7692744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
2	chr4:152564200-152595200	Weak transcription	Aorta	Aorta
3	chr4:152567400-152608600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:152567800-152609000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:152570600-152582200	Weak transcription	Spleen	Spleen
6	chr4:152571200-152584200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:152571200-152584200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:152571600-152583600	Weak transcription	Ovary	ovary
9	chr4:152571600-152595000	Weak transcription	HepG2	liver
10	chr4:152574400-152582800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:152575000-152580200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:152575400-152582000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:152575600-152580600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:152576800-152580400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:152577200-152580200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:152577200-152580800	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr4:152577200-152581000	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr4:152577200-152581400	Strong transcription	H9 Cell Line	embryonic stem cell
19	chr4:152577200-152585000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:152577400-152580200	Strong transcription	Fetal Intestine Large	intestine
21	chr4:152577400-152580200	Strong transcription	HMEC	breast
22	chr4:152577400-152580400	Strong transcription	Pancreas	Pancrea
23	chr4:152577400-152580800	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr4:152577400-152580800	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:152577400-152581600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:152578000-152581400	Strong transcription	Left Ventricle	heart
27	chr4:152578400-152580800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:152578400-152595200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr4:152578600-152580200	Strong transcription	Placenta Amnion	Placenta Amnion
30	chr4:152578800-152581200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr4:152579000-152583400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:152579200-152584000	Weak transcription	Colonic Mucosa	Colon
33	chr4:152579200-152597400	Weak transcription	Liver	Liver
34	chr4:152579400-152581000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr4:152579400-152582400	Enhancers	Psoas Muscle	Psoas
36	chr4:152579600-152580200	Weak transcription	Fetal Stomach	stomach
37	chr4:152579600-152580400	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr4:152579600-152580800	Enhancers	Thymus	Thymus
39	chr4:152579600-152581200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr4:152579600-152581400	Enhancers	Fetal Thymus	thymus
41	chr4:152579600-152581800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:152579600-152583200	Weak transcription	Esophagus	oesophagus
43	chr4:152579600-152584400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr4:152579600-152585000	Weak transcription	Gastric	stomach
45	chr4:152579600-152587600	Weak transcription	NHEK	skin
46	chr4:152579600-152592200	Weak transcription	Right Ventricle	heart
47	chr4:152579800-152580200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr4:152579800-152580600	Enhancers	Colon Smooth Muscle	Colon
49	chr4:152579800-152581200	Weak transcription	Fetal Intestine Small	intestine
50	chr4:152579800-152581200	Enhancers	HUVEC	blood vessel

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