Variant report

Variant	rs72962934
Chromosome Location	chr4:152632229-152632230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152625421..152627707-chr4:152631872..152634146,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59268491	1.00[AMR][1000 genomes]
rs59462421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59843173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60918529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61497752	1.00[AMR][1000 genomes]
rs61611728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7692744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508322	chr4:152617079-152678951	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152585800-152640400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:152591200-152646800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:152592600-152636400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:152596400-152640600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:152598400-152648200	Weak transcription	HMEC	breast
6	chr4:152599000-152637200	Weak transcription	GM12878-XiMat	blood
7	chr4:152609200-152640200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:152609600-152640400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:152609800-152646200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:152611800-152640000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:152612000-152651000	Weak transcription	K562	blood
12	chr4:152612200-152632600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:152612400-152642600	Weak transcription	NHLF	lung
14	chr4:152614400-152640200	Weak transcription	Gastric	stomach
15	chr4:152614600-152651200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:152615000-152651000	Weak transcription	HSMM	muscle
17	chr4:152616600-152665400	Weak transcription	NHDF-Ad	bronchial
18	chr4:152619000-152638400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:152620400-152632400	Weak transcription	Psoas Muscle	Psoas
20	chr4:152620600-152641200	Strong transcription	Primary T cells from cord blood	blood
21	chr4:152621400-152651600	Weak transcription	Small Intestine	intestine
22	chr4:152622000-152644600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:152622400-152640000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:152622600-152641000	Weak transcription	HSMMtube	muscle
25	chr4:152622800-152638000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:152623000-152646200	Weak transcription	Fetal Lung	lung
27	chr4:152623200-152648200	Weak transcription	NHEK	skin
28	chr4:152623400-152639600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr4:152623800-152634800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr4:152623800-152642600	Weak transcription	Fetal Kidney	kidney
31	chr4:152624000-152635600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:152624000-152645600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:152624000-152646400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:152624200-152638600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr4:152624200-152639800	Weak transcription	Placenta	Placenta
36	chr4:152625000-152635000	Weak transcription	Brain Angular Gyrus	brain
37	chr4:152625000-152651000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:152625200-152634800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:152625200-152635400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:152625200-152642400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:152625600-152640200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:152626600-152634200	Weak transcription	Brain Anterior Caudate	brain
43	chr4:152627200-152634800	Weak transcription	Fetal Thymus	thymus
44	chr4:152627400-152641200	Weak transcription	Right Ventricle	heart
45	chr4:152629000-152640200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:152629000-152658800	Weak transcription	Pancreas	Pancrea
47	chr4:152629200-152632400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr4:152629200-152636200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:152629200-152637600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:152629200-152639000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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