The 2.0 version of rSNPBase

Variant report

Variant rs60925594
Chromosome Location chr10:6230376-6230377
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:6207000-6244400 Weak transcription Hela-S3 cervix
2 chr10:6214200-6239800 Weak transcription Cortex derived primary cultured neurospheres brain
3 chr10:6215000-6237200 Weak transcription Primary B cells from cord blood blood
4 chr10:6216200-6237400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr10:6219000-6240600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr10:6219200-6232800 Weak transcription Primary neutrophils fromperipheralblood blood
7 chr10:6219200-6236400 Weak transcription Primary T cells from cord blood blood
8 chr10:6219200-6240600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr10:6219200-6242200 Weak transcription Primary hematopoietic stem cells blood
10 chr10:6219200-6242400 Weak transcription NHEK skin
11 chr10:6220400-6233200 Weak transcription NHLF lung
12 chr10:6220400-6242600 Weak transcription Primary T cells fromperipheralblood blood
13 chr10:6220800-6237200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr10:6222800-6242800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr10:6224600-6242000 Weak transcription A549 lung
16 chr10:6224800-6232200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr10:6224800-6232800 Weak transcription Colon Smooth Muscle Colon
18 chr10:6224800-6233200 Weak transcription Fetal Stomach stomach
19 chr10:6224800-6236600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr10:6224800-6242200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr10:6225000-6233200 Weak transcription Lung lung
22 chr10:6225000-6233400 Weak transcription Left Ventricle heart
23 chr10:6225000-6233400 Weak transcription Pancreas Pancrea
24 chr10:6225000-6233600 Weak transcription HSMMtube muscle
25 chr10:6225000-6234000 Weak transcription Colonic Mucosa Colon
26 chr10:6225200-6233800 Weak transcription Small Intestine intestine
27 chr10:6225400-6233600 Weak transcription Brain Angular Gyrus brain
28 chr10:6225400-6233600 Weak transcription Fetal Thymus thymus
29 chr10:6225400-6233600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr10:6225400-6237200 Weak transcription Thymus Thymus
31 chr10:6225600-6234400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr10:6226400-6231200 Enhancers Fetal Adrenal Gland Adrenal Gland
33 chr10:6227000-6230400 Enhancers GM12878-XiMat blood
34 chr10:6227000-6231800 Enhancers Ovary ovary
35 chr10:6227600-6232800 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr10:6228200-6230400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
37 chr10:6228200-6230400 Enhancers Skeletal Muscle Male skeletal muscle
38 chr10:6228200-6230400 Enhancers HSMM muscle
39 chr10:6228400-6230400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
40 chr10:6228400-6230800 Enhancers Adipose Nuclei Adipose
41 chr10:6228600-6233000 Weak transcription Primary T helper cells fromperipheralblood blood
42 chr10:6228600-6233200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr10:6228600-6233400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr10:6228600-6233600 Weak transcription Muscle Satellite Cultured Cells --
45 chr10:6228600-6233600 Weak transcription NHDF-Ad bronchial
46 chr10:6228600-6234000 Weak transcription NH-A brain
47 chr10:6228600-6237200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr10:6228600-6242400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr10:6228800-6230800 Enhancers Fetal Muscle Leg muscle
50 chr10:6228800-6236400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015