Variant report

Variant	rs609401
Chromosome Location	chr15:53794340-53794341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10444799	1.00[ASN][1000 genomes]
rs10444830	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518727	0.89[ASN][1000 genomes]
rs11070988	0.89[ASN][1000 genomes]
rs11070989	0.89[ASN][1000 genomes]
rs1189331	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12148070	0.81[AMR][1000 genomes]
rs12438390	0.89[ASN][1000 genomes]
rs12440270	0.93[ASN][1000 genomes]
rs12440842	0.92[ASN][1000 genomes]
rs12442849	0.89[ASN][1000 genomes]
rs12442851	0.89[ASN][1000 genomes]
rs16966177	0.92[ASN][1000 genomes]
rs16966184	0.89[ASN][1000 genomes]
rs16966209	0.89[ASN][1000 genomes]
rs16966210	0.82[ASN][1000 genomes]
rs17548678	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17630504	1.00[ASN][1000 genomes]
rs17630697	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906424	0.89[ASN][1000 genomes]
rs1906425	0.89[ASN][1000 genomes]
rs1906426	0.89[ASN][1000 genomes]
rs2129774	0.89[ASN][1000 genomes]
rs2220382	0.89[ASN][1000 genomes]
rs2220383	0.89[ASN][1000 genomes]
rs2414242	0.89[ASN][1000 genomes]
rs28760919	0.81[ASN][1000 genomes]
rs3088091	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3206108	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56916135	0.89[ASN][1000 genomes]
rs57855113	0.85[ASN][1000 genomes]
rs62005869	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62005872	0.92[ASN][1000 genomes]
rs62005873	0.92[ASN][1000 genomes]
rs62005874	0.92[ASN][1000 genomes]
rs62005881	0.81[ASN][1000 genomes]
rs62005902	0.89[ASN][1000 genomes]
rs62005903	0.89[ASN][1000 genomes]
rs62005905	0.89[ASN][1000 genomes]
rs62005906	0.89[ASN][1000 genomes]
rs62005908	0.89[ASN][1000 genomes]
rs62005909	0.89[ASN][1000 genomes]
rs62005911	0.89[ASN][1000 genomes]
rs62005912	0.89[ASN][1000 genomes]
rs62007573	1.00[ASN][1000 genomes]
rs6493631	0.85[ASN][1000 genomes]
rs7161989	0.92[ASN][1000 genomes]
rs7162024	0.92[ASN][1000 genomes]
rs7178004	0.92[ASN][1000 genomes]
rs73406225	0.89[ASN][1000 genomes]
rs74017420	0.92[ASN][1000 genomes]
rs8030213	1.00[ASN][1000 genomes]
rs8041720	0.81[AMR][1000 genomes]
rs953521	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv904224	chr15:53668018-54210677	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1040216	chr15:53743780-53851679	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv833009	chr15:53752901-53935303	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv569432	chr15:53785483-53811621	Enhancers Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53792200-53806800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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