Variant report

Variant	rs8041720
Chromosome Location	chr15:53777673-53777674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10444799	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10444830	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1189331	0.82[EUR][1000 genomes]
rs12148070	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12440270	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12440842	0.87[AMR][1000 genomes]
rs16966177	0.86[AMR][1000 genomes]
rs16966184	0.86[AMR][1000 genomes]
rs17548678	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17630504	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17630697	0.87[AMR][1000 genomes]
rs3088091	0.87[AMR][1000 genomes]
rs3206108	0.87[AMR][1000 genomes]
rs4531685	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57855113	0.86[AMR][1000 genomes]
rs609401	0.81[AMR][1000 genomes]
rs62005869	0.89[AMR][1000 genomes]
rs62005872	0.90[AMR][1000 genomes]
rs62005873	0.86[AMR][1000 genomes]
rs62005874	0.81[AMR][1000 genomes]
rs62005881	0.83[AMR][1000 genomes]
rs62005902	0.84[AMR][1000 genomes]
rs62005903	0.84[AMR][1000 genomes]
rs62007573	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6493631	0.81[AMR][1000 genomes]
rs7161989	0.86[AMR][1000 genomes]
rs7162024	0.81[AMR][1000 genomes]
rs7174349	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7174416	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7178004	0.86[AMR][1000 genomes]
rs73406225	0.84[AMR][1000 genomes]
rs74017408	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74017420	0.86[AMR][1000 genomes]
rs8031764	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs953521	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv904224	chr15:53668018-54210677	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049319	chr15:53671945-53785267	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1050374	chr15:53674726-53785267	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1040216	chr15:53743780-53851679	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv833009	chr15:53752901-53935303	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1042604	chr15:53760504-53785267	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv519399	chr15:53763360-53786291	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2757601	chr15:53769721-53785483	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2760032	chr15:53769721-53785483	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1052280	chr15:53770847-53784888	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1051443	chr15:53770970-53784888	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53777600-53778800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:53777600-53779400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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