Variant report

Variant	rs60954540
Chromosome Location	chr6:82773570-82773571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82772487..82775471-chr6:84042141..84044155,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12523893	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12526467	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12528171	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12529333	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12662680	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1544206	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17645030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17717759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4276553	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4292570	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4605934	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58199835	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58708235	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58834828	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60987223	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910643	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72910657	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72910658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910663	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs884655	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs884656	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82768200-82777400	Weak transcription	Fetal Brain Male	brain
2	chr6:82768400-82782600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links