Variant report

Variant	rs884655
Chromosome Location	chr6:82766724-82766725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56735007..56737964-chr6:82764892..82767185,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12523893	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526467	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528171	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529333	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662680	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544206	0.83[CHB][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17645030	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17717759	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2875114	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4276553	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4292570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605934	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58199835	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58708235	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58834828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60954540	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60987223	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72910643	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910658	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72910663	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs884656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82766400-82766800	Enhancers	Pancreas	Pancrea
2	chr6:82766400-82767200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:82766400-82767200	Enhancers	Ovary	ovary
4	chr6:82766400-82768200	Enhancers	Brain Germinal Matrix	brain
5	chr6:82766400-82768400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:82766400-82768400	Enhancers	Brain Substantia Nigra	brain
7	chr6:82766400-82768400	Enhancers	Fetal Muscle Leg	muscle
8	chr6:82766600-82766800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:82766600-82766800	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:82766600-82766800	Enhancers	Left Ventricle	heart
11	chr6:82766600-82767000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:82766600-82767000	Enhancers	NHDF-Ad	bronchial
13	chr6:82766600-82767200	Enhancers	Brain Angular Gyrus	brain
14	chr6:82766600-82767400	Enhancers	Brain Anterior Caudate	brain
15	chr6:82766600-82767400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:82766600-82767400	Weak transcription	HSMM	muscle
17	chr6:82766600-82768200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:82766600-82768400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:82766600-82768400	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:82766600-82768400	Enhancers	Fetal Lung	lung

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