Variant report

Variant	rs884656
Chromosome Location	chr6:82767410-82767411
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12523893	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526467	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528171	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529333	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662680	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544206	0.81[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17645030	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17717759	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2875114	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4276553	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4292570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605934	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58199835	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58708235	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58834828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60954540	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60987223	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72910643	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910658	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72910663	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs884655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82766400-82768200	Enhancers	Brain Germinal Matrix	brain
2	chr6:82766400-82768400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:82766400-82768400	Enhancers	Brain Substantia Nigra	brain
4	chr6:82766400-82768400	Enhancers	Fetal Muscle Leg	muscle
5	chr6:82766600-82768200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:82766600-82768400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:82766600-82768400	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:82766600-82768400	Enhancers	Fetal Lung	lung
9	chr6:82766800-82767800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:82766800-82767800	Weak transcription	Left Ventricle	heart
11	chr6:82766800-82767800	Weak transcription	Pancreas	Pancrea
12	chr6:82766800-82768000	Enhancers	Stomach Smooth Muscle	stomach
13	chr6:82766800-82768200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:82767000-82767800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:82767000-82768800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:82767200-82767600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:82767200-82767600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr6:82767200-82767600	Enhancers	Fetal Stomach	stomach
19	chr6:82767200-82767600	Weak transcription	Ovary	ovary
20	chr6:82767200-82767600	Enhancers	NHDF-Ad	bronchial
21	chr6:82767200-82768000	Enhancers	HMEC	breast
22	chr6:82767200-82768000	Enhancers	Osteobl	bone
23	chr6:82767200-82768200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:82767200-82768200	Enhancers	Fetal Heart	heart
25	chr6:82767200-82768400	Enhancers	Fetal Brain Female	brain
26	chr6:82767200-82768400	Enhancers	NHLF	lung
27	chr6:82767400-82767600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:82767400-82767600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:82767400-82767600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:82767400-82767600	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr6:82767400-82767800	Active TSS	Brain Angular Gyrus	brain
32	chr6:82767400-82767800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
33	chr6:82767400-82768000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:82767400-82768000	Flanking Active TSS	Brain Hippocampus Middle	brain
35	chr6:82767400-82768000	Enhancers	HSMM	muscle

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