Variant report

Variant	rs60983349
Chromosome Location	chr9:7267334-7267335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10733534	1.00[AMR][1000 genomes]
rs10739128	1.00[AMR][1000 genomes]
rs12001435	1.00[AMR][1000 genomes]
rs12004432	1.00[AMR][1000 genomes]
rs12004970	1.00[AMR][1000 genomes]
rs4742324	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1032465	chr9:7182123-7409755	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv539972	chr9:7182123-7409755	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1020908	chr9:7188471-7358893	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv539973	chr9:7188471-7358893	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1021049	chr9:7192313-7288729	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1027321	chr9:7239198-7270363	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv892194	chr9:7241270-7351360	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv892195	chr9:7251005-7285728	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2752310	chr9:7260390-7390841	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7264800-7268600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:7265000-7267800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:7265000-7268800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:7265200-7267400	Weak transcription	Fetal Kidney	kidney
5	chr9:7265600-7267800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:7266400-7267400	Enhancers	Brain Substantia Nigra	brain
7	chr9:7266400-7267600	Enhancers	Fetal Brain Female	brain
8	chr9:7266400-7267800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:7266600-7267400	Enhancers	Brain Anterior Caudate	brain
10	chr9:7266600-7267600	Enhancers	Brain Cingulate Gyrus	brain
11	chr9:7266600-7267600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr9:7266600-7267600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr9:7266600-7267800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:7266800-7267400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:7266800-7267400	Enhancers	Brain Germinal Matrix	brain
16	chr9:7266800-7267600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:7266800-7267600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:7266800-7267600	Enhancers	Fetal Brain Male	brain
19	chr9:7266800-7267800	Enhancers	Fetal Intestine Large	intestine
20	chr9:7266800-7268000	Enhancers	Fetal Intestine Small	intestine
21	chr9:7266800-7268000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr9:7267000-7267400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:7267000-7267400	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr9:7267000-7267800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr9:7267200-7268200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links