Variant report

Variant rs60983897
Chromosome Location chr3:50309242-50309243
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:50302600-50309600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
2 chr3:50305600-50310600 Weak transcription H9 Cell Line embryonic stem cell
3 chr3:50305800-50309800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr3:50306000-50309400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr3:50306400-50310600 Weak transcription Left Ventricle heart
6 chr3:50306800-50316000 Weak transcription Aorta Aorta
7 chr3:50307200-50310600 Weak transcription Right Atrium heart
8 chr3:50307400-50310400 Enhancers Fetal Adrenal Gland Adrenal Gland
9 chr3:50307600-50309400 Genic enhancers Brain Dorsolateral Prefrontal Cortex brain
10 chr3:50307600-50309400 Transcr. at gene 5' and 3' Placenta Placenta
11 chr3:50307600-50310400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr3:50307600-50310400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr3:50307800-50309600 Enhancers Adipose Nuclei Adipose
14 chr3:50307800-50310400 Enhancers Rectal Mucosa Donor 29 rectum
15 chr3:50307800-50310400 Weak transcription Right Ventricle heart
16 chr3:50307800-50310600 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr3:50308000-50309400 Enhancers NHLF lung
18 chr3:50308000-50309600 Genic enhancers Brain Hippocampus Middle brain
19 chr3:50308000-50309600 Enhancers Colonic Mucosa Colon
20 chr3:50308000-50309600 Genic enhancers Fetal Muscle Leg muscle
21 chr3:50308000-50310400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr3:50308000-50310600 Weak transcription Fetal Heart heart
23 chr3:50308000-50310600 Weak transcription Psoas Muscle Psoas
24 chr3:50308200-50310400 Enhancers Breast Myoepithelial Primary Cells Breast
25 chr3:50308200-50310600 Enhancers Fetal Kidney kidney
26 chr3:50308200-50310600 Enhancers Stomach Mucosa stomach
27 chr3:50308400-50309400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr3:50308400-50310200 Weak transcription Muscle Satellite Cultured Cells --
29 chr3:50308400-50310400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr3:50308400-50310400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr3:50308400-50310400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr3:50308400-50310400 Weak transcription Colon Smooth Muscle Colon
33 chr3:50308400-50310400 Weak transcription HSMM muscle
34 chr3:50308400-50310400 Weak transcription NHEK skin
35 chr3:50308400-50310400 Weak transcription Osteobl bone
36 chr3:50308400-50310600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr3:50308400-50310600 Weak transcription NHDF-Ad bronchial
38 chr3:50308600-50309400 Flanking Active TSS Fetal Intestine Large intestine
39 chr3:50308600-50309600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr3:50308600-50309800 Strong transcription Fetal Stomach stomach
41 chr3:50308600-50310400 Enhancers Rectal Mucosa Donor 31 rectum
42 chr3:50308600-50310600 Weak transcription Esophagus oesophagus
43 chr3:50308800-50309400 Enhancers ES-I3 Cell Line embryonic stem cell
44 chr3:50308800-50309400 Genic enhancers Brain Anterior Caudate brain
45 chr3:50308800-50309400 Genic enhancers Brain Inferior Temporal Lobe brain
46 chr3:50308800-50309400 Enhancers Spleen Spleen
47 chr3:50308800-50310600 Enhancers Brain Angular Gyrus brain
48 chr3:50308800-50316000 Weak transcription HSMMtube muscle
49 chr3:50309000-50309400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr3:50309000-50309400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung

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