Variant report

Variant	rs72932962
Chromosome Location	chr3:50336693-50336694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:50335795-50338360	HepG2	liver:	n/a	n/a
2	SP1	chr3:50336328-50337316	A549	lung:	n/a	chr3:50337065-50337077 chr3:50336965-50336977 chr3:50336896-50336908 chr3:50337065-50337077 chr3:50337066-50337075 chr3:50336380-50336390 chr3:50337097-50337106 chr3:50337098-50337111 chr3:50337097-50337106 chr3:50337096-50337108 chr3:50336381-50336390 chr3:50336965-50336977 chr3:50336913-50336922 chr3:50337066-50337080 chr3:50336380-50336390 chr3:50337097-50337107 chr3:50337096-50337108 chr3:50337098-50337107 chr3:50336897-50336906 chr3:50337067-50337076 chr3:50336380-50336389 chr3:50336896-50336908 chr3:50336379-50336391 chr3:50336379-50336391 chr3:50336367-50336379 chr3:50336440-50336454 chr3:50336966-50336980 chr3:50336368-50336378
3	TCF12	chr3:50336219-50337339	ECC-1	luminal epithelium:	n/a	chr3:50337141-50337151 chr3:50337076-50337083 chr3:50337308-50337317
4	POLR2A	chr3:50336384-50337006	GM12892	blood:	n/a	n/a
5	TAF1	chr3:50336448-50337316	H1-neurons	neurons:	n/a	n/a
6	CTCF	chr3:50336600-50336750	GM12872	blood:	n/a	n/a
7	MAX	chr3:50336168-50337372	GM12878	blood:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
8	MXI1	chr3:50336202-50337319	GM12878	blood:	n/a	n/a
9	TBP	chr3:50336234-50337747	Hela-S3	cervix:	n/a	n/a
10	ATF3	chr3:50336630-50336937	K562	blood:	n/a	chr3:50336837-50336845
11	CTCF	chr3:50336640-50336790	AG09319	gingival:	n/a	n/a
12	POLR2A	chr3:50336255-50336935	GM12892	blood:	n/a	n/a
13	TAF1	chr3:50336585-50336868	GM12892	blood:	n/a	n/a
14	TCF12	chr3:50336374-50336716	A549	lung:	n/a	n/a
15	JUND	chr3:50336686-50336894	H1-hESC	embryonic stem cell:	n/a	n/a
16	MXI1	chr3:50336304-50337968	Hela-S3	cervix:	n/a	n/a
17	CTCF	chr3:50336661-50336820	Hela-S3	cervix:	n/a	n/a
18	JUND	chr3:50336677-50337372	HepG2	liver:	n/a	chr3:50336924-50336936 chr3:50337233-50337242
19	POLR2A	chr3:50335828-50337929	HepG2	liver:	n/a	n/a
20	JUND	chr3:50336627-50337829	HepG2	liver:	n/a	chr3:50336924-50336936 chr3:50337233-50337242
21	E2F6	chr3:50336264-50336931	A549	lung:	n/a	n/a
22	POLR2A	chr3:50336044-50338389	HepG2	liver:	n/a	n/a
23	CTCF	chr3:50336620-50336770	WERI-Rb-1	eye:	n/a	n/a
24	CTCF	chr3:50336566-50336864	K562	blood:	n/a	n/a
25	POLR2A	chr3:50336515-50337438	HepG2	liver:	n/a	n/a
26	POLR2A	chr3:50336094-50337984	GM19099	blood:	n/a	n/a
27	ZNF143	chr3:50336313-50336870	K562	blood:	n/a	n/a
28	CTCF	chr3:50336631-50336809	HUVEC	blood vessel:	n/a	n/a
29	POLR2A	chr3:50336101-50338003	HCT-116	colon:	n/a	n/a
30	POLR2A	chr3:50336519-50336893	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr3:50336628-50336851	LNCaP	prostate:	n/a	n/a
32	POLR2A	chr3:50335773-50338119	K562	blood:	n/a	n/a
33	CTCF	chr3:50336660-50336810	HPAF	blood vessel:	n/a	n/a
34	POLR2A	chr3:50335711-50338284	HL-60	blood:	n/a	n/a
35	POLR2A	chr3:50336174-50337537	ECC-1	luminal epithelium:	n/a	n/a
36	HDAC2	chr3:50336181-50336784	HepG2	liver:	n/a	chr3:50336591-50336600
37	SP2	chr3:50336643-50336825	K562	blood:	n/a	n/a
38	SP1	chr3:50336601-50337515	HepG2	liver:	n/a	chr3:50337065-50337077 chr3:50336965-50336977 chr3:50336896-50336908 chr3:50337065-50337077 chr3:50337066-50337075 chr3:50337097-50337106 chr3:50337098-50337111 chr3:50337097-50337106 chr3:50337096-50337108 chr3:50336965-50336977 chr3:50336913-50336922 chr3:50337066-50337080 chr3:50337097-50337107 chr3:50337096-50337108 chr3:50337098-50337107 chr3:50336897-50336906 chr3:50337067-50337076 chr3:50336896-50336908 chr3:50336966-50336980
39	CTCF	chr3:50336640-50336790	K562	blood:	n/a	n/a
40	NRF1	chr3:50336232-50337652	SK-N-SH	brain:	n/a	chr3:50336380-50336389
41	SIN3AK20	chr3:50336488-50336818	A549	lung:	n/a	n/a
42	CTCF	chr3:50336680-50336830	GM12878	blood:	n/a	n/a
43	MAX	chr3:50336380-50337453	A549	lung:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
44	POLR2A	chr3:50335760-50338326	HepG2	liver:	n/a	n/a
45	POLR2A	chr3:50336232-50336953	HCT-116	colon:	n/a	n/a
46	SP1	chr3:50336064-50337371	H1-hESC	embryonic stem cell:	n/a	chr3:50337065-50337077 chr3:50336202-50336214 chr3:50336965-50336977 chr3:50336896-50336908 chr3:50337065-50337077 chr3:50337066-50337075 chr3:50336380-50336390 chr3:50337097-50337106 chr3:50337098-50337111 chr3:50337097-50337106 chr3:50336204-50336213 chr3:50337096-50337108 chr3:50336381-50336390 chr3:50336965-50336977 chr3:50336203-50336217 chr3:50336913-50336922 chr3:50337066-50337080 chr3:50336380-50336390 chr3:50337097-50337107 chr3:50337096-50337108 chr3:50337098-50337107 chr3:50336897-50336906 chr3:50337067-50337076 chr3:50336380-50336389 chr3:50336896-50336908 chr3:50336379-50336391 chr3:50336379-50336391 chr3:50336367-50336379 chr3:50336440-50336454 chr3:50336966-50336980 chr3:50336368-50336378
47	ZNF143	chr3:50336345-50337219	GM12878	blood:	n/a	n/a
48	CEBPB	chr3:50336631-50338121	HepG2	liver:	n/a	n/a
49	RELA	chr3:50336146-50337026	GM10847	blood:	n/a	n/a
50	CTCFL	chr3:50336662-50336804	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:50336684-50336734	Hela-S3	cervix:	n/a
2	chr3:50336673-50336723	H1-hESC	embryonic stem cell:	embryo
3	chr3:50336673-50336723	HNPCEpiC	eye:	n/a
4	chr3:50336684-50336734	AoSMC	blood vessel:	n/a
5	chr3:50336684-50336734	HRPEpiC	eye:	n/a
6	chr3:50336684-50336734	NH-A	brain:	n/a
7	chr3:50336673-50336723	IMR90	lung:	fetal
8	chr3:50336684-50336734	T-47D	breast:	n/a
9	chr3:50336684-50336734	HAEpiC	amniotic membrane:	n/a
10	chr3:50336673-50336723	AG04449	skin:	fetal
11	chr3:50336684-50336734	Jurkat	blood:	n/a
12	chr3:50336673-50336723	NHBE	bronchial:	n/a
13	chr3:50336684-50336734	A549	lung:	n/a
14	chr3:50336684-50336734	AG09319	gingival:	n/a
15	chr3:50336673-50336723	HRCEpiC	kidney:	n/a
16	chr3:50336673-50336723	CMK	blood:	n/a
17	chr3:50336684-50336734	ECC-1	luminal epithelium:	n/a
18	chr3:50336684-50336734	HIPEpiC	eye:	n/a
19	chr3:50336684-50336734	HCT-116	colon:	n/a
20	chr3:50336673-50336723	HL-60	blood:	n/a
21	chr3:50336684-50336734	AG04450	lung:	fetal
22	chr3:50336673-50336723	Jurkat	blood:	n/a
23	chr3:50336673-50336723	ovcar-3	ovarian:	n/a
24	chr3:50336673-50336723	GM12891	blood:	n/a
25	chr3:50336684-50336734	HCF	heart:	n/a
26	chr3:50336684-50336734	Caco-2	colon:	n/a
27	chr3:50336684-50336734	CMK	blood:	n/a
28	chr3:50336684-50336734	HNPCEpiC	eye:	n/a
29	chr3:50336673-50336723	HCM	heart:	n/a
30	chr3:50336673-50336723	AG09309	skin:	n/a
31	chr3:50336673-50336723	MCF-7	breast:	n/a
32	chr3:50336673-50336723	SK-N-SH	brain:	n/a
33	chr3:50336684-50336734	SKMC	muscle:	n/a
34	chr3:50336673-50336723	NT2-D1	testis:	n/a
35	chr3:50336673-50336723	HRPEpiC	eye:	n/a
36	chr3:50336684-50336734	SK-N-SH_RA	brain:	n/a
37	chr3:50336684-50336734	MCF10A-Er-Src	breast:	n/a
38	chr3:50336673-50336723	HPAEpiC	pulmonary alveolar:	n/a
39	chr3:50336684-50336734	NHBE	bronchial:	n/a
40	chr3:50336673-50336723	A549	lung:	n/a
41	chr3:50336673-50336723	T-47D	breast:	n/a
42	chr3:50336673-50336723	AG04450	lung:	fetal
43	chr3:50336673-50336723	HUVEC	blood vessel:	n/a
44	chr3:50336673-50336723	AG10803	skin:	n/a
45	chr3:50336684-50336734	HUVEC	blood vessel:	n/a
46	chr3:50336684-50336734	RPTEC	kidney:	n/a
47	chr3:50336684-50336734	PrEC	prostate:	n/a
48	chr3:50336673-50336723	BE2_C	brain:	n/a
49	chr3:50336684-50336734	NT2-D1	testis:	n/a
50	chr3:50336673-50336723	AoSMC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:96305128..96305906-chr3:50336255..50337029,2	Hela-S3	cervix:
2	chr15:83418706..83419650-chr3:50336333..50336903,2	Hela-S3	cervix:
3	chr3:50308810..50310913-chr3:50335251..50336783,2	MCF-7	breast:
4	chr3:50296030..50318456-chr3:50318822..50339499,66	MCF-7	breast:
5	chr3:50334511..50339320-chr3:50364012..50367102,8	MCF-7	breast:
6	chr3:50335402..50338508-chr3:50371973..50376083,5	K562	blood:
7	chr3:50310399..50313142-chr3:50335615..50338582,3	K562	blood:
8	chr15:59041650..59042242-chr3:50336459..50337109,2	Hela-S3	cervix:
9	chr3:50327926..50342388-chr3:50350886..50359960,36	MCF-7	breast:
10	chr2:10589361..10589892-chr3:50336432..50336956,2	Hela-S3	cervix:
11	chr3:50324564..50342616-chr3:50350801..50362499,49	MCF-7	breast:
12	chr17:79633334..79633968-chr3:50336611..50337320,2	Hela-S3	cervix:
13	chr1:150551439..150552084-chr3:50336152..50336806,2	NB4	blood:
14	chr12:6561022..6561774-chr3:50336490..50337057,2	NB4	blood:
15	chr3:50334885..50342502-chr3:50352987..50366859,26	K562	blood:
16	chr3:50295925..50299690-chr3:50335868..50338319,4	K562	blood:
17	chr3:50333907..50338508-chr3:50371973..50376030,7	K562	blood:
18	chr3:50297731..50299690-chr3:50335668..50338319,3	K562	blood:
19	chr3:50335131..50340487-chr3:50360694..50367461,13	K562	blood:
20	chr3:50335266..50337009-chr6:27114656..27117147,2	K562	blood:
21	chr3:50334334..50341950-chr3:50357130..50360296,11	K562	blood:
22	chr3:50336373..50338366-chr3:50377598..50379105,2	K562	blood:
23	chr3:50272615..50275191-chr3:50335158..50337593,2	MCF-7	breast:

Variant related genes	Relation type
HYAL3	TF binding region
NAT6	TF binding region
NAT6	CpG island
HYAL3	CpG island
ENSG00000012171	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000114353	Chromatin interaction
ENSG00000235058	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000230454	Chromatin interaction
ENSG00000068028	Chromatin interaction
ENSG00000185298	Chromatin interaction
ENSG00000204237	Chromatin interaction
ENSG00000250988	Chromatin interaction
ENSG00000139192	Chromatin interaction
ENSG00000179564	Chromatin interaction
ENSG00000119969	Chromatin interaction
ENSG00000068001	Chromatin interaction
ENSG00000137845	Chromatin interaction
ENSG00000232352	Chromatin interaction
ENSG00000257135	Chromatin interaction
ENSG00000114383	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12490837	0.94[AFR][1000 genomes]
rs2229647	0.97[AFR][1000 genomes]
rs2233476	0.91[AFR][1000 genomes]
rs2233482	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2236946	0.83[AFR][1000 genomes]
rs35587949	0.89[AFR][1000 genomes]
rs4688679	0.91[AFR][1000 genomes]
rs4688728	0.89[AFR][1000 genomes]
rs4688736	0.97[AFR][1000 genomes]
rs58780990	1.00[AMR][1000 genomes]
rs59476380	0.86[AFR][1000 genomes]
rs59556423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60983897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61275090	1.00[AMR][1000 genomes]
rs61689858	1.00[AMR][1000 genomes]
rs61737738	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932956	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934803	1.00[AMR][1000 genomes]
rs72934806	1.00[AMR][1000 genomes]
rs72934814	1.00[AMR][1000 genomes]
rs72934815	1.00[AMR][1000 genomes]
rs72934824	1.00[AMR][1000 genomes]
rs72934827	1.00[AMR][1000 genomes]
rs72934830	1.00[AMR][1000 genomes]
rs928946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv1013949	chr3:50151712-50339163	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv876769	chr3:50155468-50408398	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	esv1793751	chr3:50157364-50476363	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
6	esv1828162	chr3:50157364-50506151	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
7	nsv590251	chr3:50158774-50337422	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
9	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
10	nsv523560	chr3:50172397-50339163	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
11	nsv1014256	chr3:50187646-50339163	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
12	nsv536565	chr3:50187646-50339163	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
14	nsv590253	chr3:50196418-50337422	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
15	esv2757870	chr3:50198478-50371377	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
16	esv2759148	chr3:50198478-50371377	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
17	nsv834692	chr3:50198485-50393464	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
18	nsv590254	chr3:50243510-50388607	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
19	nsv460531	chr3:50247824-50436827	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
20	nsv590255	chr3:50247824-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
21	nsv876772	chr3:50255305-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv590257	chr3:50302830-50393640	Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
23	nsv590256	chr3:50302830-50420554	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
24	nsv876774	chr3:50302830-50436827	Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
25	nsv876773	chr3:50302830-50480131	Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
26	nsv834693	chr3:50302830-50507964	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
27	nsv876775	chr3:50324672-50504896	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50335200-50338000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:50335600-50336800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr3:50335600-50336800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:50335600-50336800	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr3:50335600-50336800	Flanking Active TSS	Dnd41	blood
6	chr3:50335600-50336800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr3:50335600-50337200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:50335600-50337400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr3:50335800-50336800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr3:50335800-50336800	Flanking Active TSS	Fetal Muscle Trunk	muscle
11	chr3:50335800-50336800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr3:50335800-50336800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr3:50335800-50336800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr3:50335800-50337200	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr3:50335800-50337200	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr3:50335800-50337200	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr3:50335800-50337400	Active TSS	H9 Cell Line	embryonic stem cell
18	chr3:50335800-50337400	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr3:50335800-50337400	Active TSS	HSMMtube	muscle
20	chr3:50335800-50338200	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr3:50336000-50336800	Flanking Active TSS	Colonic Mucosa	Colon
22	chr3:50336000-50336800	Flanking Active TSS	Spleen	Spleen
23	chr3:50336000-50337200	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr3:50336000-50337200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:50336000-50337400	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr3:50336000-50337400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:50336000-50337400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr3:50336000-50337400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:50336000-50337400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr3:50336000-50337400	Active TSS	A549	lung
31	chr3:50336000-50337600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr3:50336000-50337600	Active TSS	Ovary	ovary
33	chr3:50336200-50336800	Active TSS	Placenta Amnion	Placenta Amnion
34	chr3:50336200-50337200	Active TSS	H1 Cell Line	embryonic stem cell
35	chr3:50336200-50337200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:50336200-50337200	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr3:50336200-50337200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:50336200-50337200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:50336200-50337200	Active TSS	GM12878-XiMat	blood
40	chr3:50336200-50337200	Active TSS	Hela-S3	cervix
41	chr3:50336200-50337200	Bivalent/Poised TSS	HepG2	liver
42	chr3:50336200-50337400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:50336200-50337400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:50336200-50337400	Active TSS	Colon Smooth Muscle	Colon
45	chr3:50336200-50337400	Active TSS	Fetal Brain Female	brain
46	chr3:50336200-50337400	Active TSS	Fetal Kidney	kidney
47	chr3:50336200-50337400	Active TSS	K562	blood
48	chr3:50336200-50337400	Active TSS	NHDF-Ad	bronchial
49	chr3:50336200-50337600	Active TSS	Esophagus	oesophagus
50	chr3:50336200-50337600	Active TSS	Gastric	stomach

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