Variant report

Variant	rs12490837
Chromosome Location	chr3:50310310-50310311
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:50310203-50310802	HepG2	liver:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
2	FOXM1	chr3:50310176-50310735	GM12878	blood:	n/a	n/a
3	JUN	chr3:50310202-50310907	K562	blood:	n/a	chr3:50310405-50310418
4	PAX5	chr3:50310306-50310669	GM12878	blood:	n/a	n/a
5	MAX	chr3:50310306-50310823	A549	lung:	n/a	n/a
6	RAD21	chr3:50310156-50311037	HCT-116	colon:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
7	PML	chr3:50310188-50310900	GM12878	blood:	n/a	n/a
8	CTCF	chr3:50310156-50311054	HCT-116	colon:	n/a	chr3:50310515-50310528 chr3:50310490-50310500 chr3:50310513-50310531 chr3:50310508-50310529
9	CTCF	chr3:50310298-50310793	H1-hESC	embryonic stem cell:	n/a	chr3:50310515-50310528 chr3:50310490-50310500 chr3:50310513-50310531 chr3:50310508-50310529
10	IRF4	chr3:50310272-50310642	GM12878	blood:	n/a	n/a
11	CTCF	chr3:50310287-50310745	H1-hESC	embryonic stem cell:	n/a	chr3:50310515-50310528 chr3:50310490-50310500 chr3:50310513-50310531 chr3:50310508-50310529
12	CTCF	chr3:50310083-50311135	SK-N-SH	brain:	n/a	chr3:50310515-50310528 chr3:50310490-50310500 chr3:50310513-50310531 chr3:50310508-50310529
13	MTA3	chr3:50310203-50310786	GM12878	blood:	n/a	n/a
14	CBX3	chr3:50310305-50310752	K562	blood:	n/a	n/a
15	CTCF	chr3:50310309-50310661	SK-N-SH_RA	brain:	n/a	chr3:50310515-50310528 chr3:50310490-50310500 chr3:50310513-50310531 chr3:50310508-50310529
16	RAD21	chr3:50310305-50310745	H1-hESC	embryonic stem cell:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
17	RAD21	chr3:50310256-50310712	H1-hESC	embryonic stem cell:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
18	SIN3AK20	chr3:50310304-50310731	SK-N-SH	brain:	n/a	n/a
19	POU2F2	chr3:50310307-50310629	GM12891	blood:	n/a	n/a
20	EP300	chr3:50310307-50310680	GM12878	blood:	n/a	n/a
21	YY1	chr3:50310289-50310677	GM12878	blood:	n/a	chr3:50310485-50310499
22	ATF2	chr3:50310233-50310811	H1-hESC	embryonic stem cell:	n/a	n/a
23	NFIC	chr3:50310309-50310804	ECC-1	luminal epithelium:	n/a	n/a
24	PAX5	chr3:50310291-50310714	GM12878	blood:	n/a	n/a
25	CTCF	chr3:50310262-50310713	ECC-1	luminal epithelium:	n/a	chr3:50310515-50310528 chr3:50310490-50310500 chr3:50310513-50310531 chr3:50310508-50310529
26	POLR2A	chr3:50310310-50310743	HepG2	liver:	n/a	n/a
27	PAX5	chr3:50310247-50310781	GM12878	blood:	n/a	n/a
28	POLR2A	chr3:50310303-50311156	MCF-7	breast:	n/a	n/a
29	NFIC	chr3:50310249-50310681	GM12878	blood:	n/a	n/a
30	YY1	chr3:50310305-50310723	GM12892	blood:	n/a	chr3:50310485-50310499
31	POLR2A	chr3:50310257-50310822	ECC-1	luminal epithelium:	n/a	n/a
32	CTCF	chr3:50310134-50310936	A549	lung:	n/a	chr3:50310515-50310528 chr3:50310490-50310500 chr3:50310513-50310531 chr3:50310508-50310529
33	BATF	chr3:50310285-50310476	GM12878	blood:	n/a	n/a
34	MAZ	chr3:50310164-50311268	IMR90	lung:	n/a	n/a
35	RAD21	chr3:50310270-50310730	GM12878	blood:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
36	RAD21	chr3:50310295-50310772	GM12878	blood:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
37	RAD21	chr3:50310166-50310845	H1-hESC	embryonic stem cell:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
38	SMC3	chr3:50310297-50310835	GM12878	blood:	n/a	chr3:50310515-50310529 chr3:50310489-50310499
39	CTCF	chr3:50310258-50311001	HCT-116	colon:	n/a	chr3:50310515-50310528 chr3:50310490-50310500 chr3:50310513-50310531 chr3:50310508-50310529
40	RAD21	chr3:50310146-50310901	ECC-1	luminal epithelium:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
41	RAD21	chr3:50310295-50310803	MCF-7	breast:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
42	RAD21	chr3:50310284-50310755	IMR90	lung:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
43	ATF2	chr3:50310232-50310774	GM12878	blood:	n/a	n/a
44	RAD21	chr3:50310306-50310836	MCF-7	breast:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
45	RAD21	chr3:50310270-50310798	ECC-1	luminal epithelium:	n/a	chr3:50310491-50310500 chr3:50310514-50310527 chr3:50310489-50310499 chr3:50310511-50310530
46	POLR2A	chr3:50310298-50310744	HepG2	liver:	n/a	n/a
47	MAX	chr3:50310307-50310779	K562	blood:	n/a	n/a
48	POLR2A	chr3:50305532-50313853	HepG2	liver:	n/a	n/a
49	CTCF	chr3:50310280-50310762	A549	lung:	n/a	chr3:50310515-50310528 chr3:50310490-50310500 chr3:50310513-50310531 chr3:50310508-50310529
50	MAZ	chr3:50310301-50310724	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:50309059..50311667-chr3:50323698..50326427,2	K562	blood:
2	chr3:50262511..50266127-chr3:50309039..50312887,6	K562	blood:
3	chr3:50305641..50310504-chr3:50314554..50317584,4	K562	blood:
4	chr3:50309725..50313756-chr3:50357883..50363910,8	K562	blood:
5	chr3:50263554..50267133-chr3:50306867..50310561,4	K562	blood:
6	chr3:50305234..50312110-chr3:50326257..50332221,8	MCF-7	breast:
7	chr3:50297097..50298047-chr3:50310088..50310992,4	MCF-7	breast:
8	chr3:50303839..50307896-chr3:50307992..50312285,6	K562	blood:
9	chr3:50296030..50318456-chr3:50318822..50339499,66	MCF-7	breast:
10	chr3:50307238..50313479-chr3:50353130..50365794,18	MCF-7	breast:
11	chr3:50304620..50307086-chr3:50310040..50312285,3	K562	blood:
12	chr3:50296610..50299539-chr3:50310066..50312117,3	K562	blood:
13	chr3:50300460..50314689-chr3:50349154..50363682,34	MCF-7	breast:
14	chr3:50229825..50230750-chr3:50310077..50311002,7	K562	blood:
15	chr3:50308810..50310913-chr3:50335251..50336783,2	MCF-7	breast:
16	chr3:50229830..50230764-chr3:50310279..50310998,2	MCF-7	breast:
17	chr3:50229808..50230758-chr3:50310116..50311009,3	MCF-7	breast:
18	chr3:50271706..50275857-chr3:50303511..50313889,17	MCF-7	breast:

Variant related genes	Relation type
SEMA3B	TF binding region
ENSG00000179564	Chromatin interaction
ENSG00000230454	Chromatin interaction
ENSG00000243477	Chromatin interaction
ENSG00000232352	Chromatin interaction
ENSG00000186792	Chromatin interaction
ENSG00000068001	Chromatin interaction
ENSG00000012171	Chromatin interaction
ENSG00000114353	Chromatin interaction
ENSG00000114383	Chromatin interaction
ENSG00000214706	Chromatin interaction
ENSG00000114378	Chromatin interaction
ENSG00000114349	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs11130248	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12054052	0.82[EUR][1000 genomes]
rs12054403	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12485286	1.00[EUR][1000 genomes]
rs12485390	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12485909	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12487392	0.82[EUR][1000 genomes]
rs12488235	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12488302	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12490809	1.00[EUR][1000 genomes]
rs12492683	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12492880	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12493693	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12494414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12495261	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12496815	1.00[EUR][1000 genomes]
rs12498048	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12721544	1.00[EUR][1000 genomes]
rs2006199	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2071203	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2071204	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2071205	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2071801	1.00[EUR][1000 genomes]
rs2071804	1.00[EUR][1000 genomes]
rs2072053	0.82[EUR][1000 genomes]
rs2072054	0.82[EUR][1000 genomes]
rs2073497	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2073500	1.00[EUR][1000 genomes]
rs2229647	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2233476	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2233482	0.89[AFR][1000 genomes]
rs2236943	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2236946	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2236949	0.82[EUR][1000 genomes]
rs2269430	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2269432	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2269568	1.00[EUR][1000 genomes]
rs2282750	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2285043	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2285044	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3213621	1.00[EUR][1000 genomes]
rs35455589	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35587949	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3774736	0.82[EUR][1000 genomes]
rs3774739	0.82[EUR][1000 genomes]
rs3774741	0.82[EUR][1000 genomes]
rs3774752	0.82[EUR][1000 genomes]
rs3774754	1.00[EUR][1000 genomes]
rs3774755	1.00[EUR][1000 genomes]
rs4141407	1.00[EUR][1000 genomes]
rs4688679	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4688682	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688683	0.82[EUR][1000 genomes]
rs4688724	1.00[EUR][1000 genomes]
rs4688725	1.00[EUR][1000 genomes]
rs4688728	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688732	1.00[EUR][1000 genomes]
rs4688733	1.00[EUR][1000 genomes]
rs4688734	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688736	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688738	0.82[EUR][1000 genomes]
rs4688741	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688742	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688744	1.00[EUR][1000 genomes]
rs4688746	1.00[EUR][1000 genomes]
rs4688747	0.82[EUR][1000 genomes]
rs57944420	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57978992	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58137261	0.82[EUR][1000 genomes]
rs58181992	1.00[EUR][1000 genomes]
rs58191283	0.82[EUR][1000 genomes]
rs59476380	0.80[AFR][1000 genomes]
rs59556423	0.94[AFR][1000 genomes]
rs60276643	1.00[EUR][1000 genomes]
rs60983897	0.93[AFR][1000 genomes]
rs61737738	0.96[AFR][1000 genomes]
rs72932956	0.93[AFR][1000 genomes]
rs72932959	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72932962	0.94[AFR][1000 genomes]
rs72932964	0.94[AFR][1000 genomes]
rs72932983	0.94[AFR][1000 genomes]
rs72932987	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645537	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs928946	0.94[AFR][1000 genomes]
rs9311449	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9681992	0.83[AMR][1000 genomes]
rs9882618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001775	chr3:50129479-50311666	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv1013949	chr3:50151712-50339163	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv590250	chr3:50153356-50332697	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv876769	chr3:50155468-50408398	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
7	esv1793751	chr3:50157364-50476363	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
8	esv1828162	chr3:50157364-50506151	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
9	nsv590251	chr3:50158774-50337422	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
10	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
11	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv523560	chr3:50172397-50339163	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv460529	chr3:50178011-50324672	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
14	nsv460530	chr3:50178011-50324672	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
15	nsv590252	chr3:50178011-50324672	Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
16	nsv1002916	chr3:50187646-50311666	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
17	nsv536564	chr3:50187646-50311666	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv1014256	chr3:50187646-50339163	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
19	nsv536565	chr3:50187646-50339163	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
20	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
21	nsv590253	chr3:50196418-50337422	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
22	esv2757870	chr3:50198478-50371377	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
23	esv2759148	chr3:50198478-50371377	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
24	nsv834692	chr3:50198485-50393464	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
25	nsv590254	chr3:50243510-50388607	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
26	nsv460531	chr3:50247824-50436827	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
27	nsv590255	chr3:50247824-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
28	nsv876772	chr3:50255305-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
29	nsv590257	chr3:50302830-50393640	Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
30	nsv590256	chr3:50302830-50420554	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
31	nsv876774	chr3:50302830-50436827	Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
32	nsv876773	chr3:50302830-50480131	Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
33	nsv834693	chr3:50302830-50507964	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50305600-50310600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:50306400-50310600	Weak transcription	Left Ventricle	heart
3	chr3:50306800-50316000	Weak transcription	Aorta	Aorta
4	chr3:50307200-50310600	Weak transcription	Right Atrium	heart
5	chr3:50307400-50310400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:50307600-50310400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:50307600-50310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:50307800-50310400	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr3:50307800-50310400	Weak transcription	Right Ventricle	heart
10	chr3:50307800-50310600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:50308000-50310400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:50308000-50310600	Weak transcription	Fetal Heart	heart
13	chr3:50308000-50310600	Weak transcription	Psoas Muscle	Psoas
14	chr3:50308200-50310400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:50308200-50310600	Enhancers	Fetal Kidney	kidney
16	chr3:50308200-50310600	Enhancers	Stomach Mucosa	stomach
17	chr3:50308400-50310400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:50308400-50310400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:50308400-50310400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:50308400-50310400	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:50308400-50310400	Weak transcription	HSMM	muscle
22	chr3:50308400-50310400	Weak transcription	NHEK	skin
23	chr3:50308400-50310400	Weak transcription	Osteobl	bone
24	chr3:50308400-50310600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:50308400-50310600	Weak transcription	NHDF-Ad	bronchial
26	chr3:50308600-50310400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr3:50308600-50310600	Weak transcription	Esophagus	oesophagus
28	chr3:50308800-50310600	Enhancers	Brain Angular Gyrus	brain
29	chr3:50308800-50316000	Weak transcription	HSMMtube	muscle
30	chr3:50309000-50310400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:50309000-50310400	Enhancers	Brain Substantia Nigra	brain
32	chr3:50309000-50310400	Weak transcription	Lung	lung
33	chr3:50309000-50310400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr3:50309000-50310600	Enhancers	Liver	Liver
35	chr3:50309000-50310600	Weak transcription	Gastric	stomach
36	chr3:50309200-50310400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:50309200-50310400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr3:50309200-50310400	Genic enhancers	Fetal Intestine Small	intestine
39	chr3:50309200-50310400	Enhancers	Fetal Muscle Trunk	muscle
40	chr3:50309200-50310400	Weak transcription	A549	lung
41	chr3:50309200-50310400	Weak transcription	HMEC	breast
42	chr3:50309200-50310600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:50309200-50310600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr3:50309400-50310400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:50309400-50310400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:50309400-50310400	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr3:50309400-50310400	Weak transcription	Pancreas	Pancrea
48	chr3:50309400-50310400	Weak transcription	Spleen	Spleen
49	chr3:50309400-50310600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:50309400-50310600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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