Variant report

Variant	rs2072054
Chromosome Location	chr3:50196623-50196624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr3:50196110-50196636	IMR90	lung:	n/a	n/a
2	CTCF	chr3:50196540-50196690	NHEK	skin:	n/a	n/a
3	POLR2A	chr3:50195264-50196721	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:50190470..50194491-chr3:50196225..50201802,7	K562	blood:
2	chr3:50192650..50196663-chr3:50219720..50222472,4	MCF-7	breast:
3	chr3:50191401..50200098-chr3:50206213..50213809,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235016	TF binding region
ENSG00000207922	Chromatin interaction
ENSG00000235016	Chromatin interaction
ENSG00000001617	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1005678	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs11130248	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12054052	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12054403	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12485286	0.82[EUR][1000 genomes]
rs12485390	0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12485909	0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12487392	0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12488235	0.90[AMR][1000 genomes]
rs12488302	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12490809	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12490837	0.82[EUR][1000 genomes]
rs12491177	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12492683	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12492880	0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs12493693	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12494414	1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12495261	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12496815	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12498048	0.91[AMR][1000 genomes]
rs12632110	0.81[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs12721544	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2006199	0.84[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2021734	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2071203	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2071204	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2071205	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2071801	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2071804	0.82[EUR][1000 genomes]
rs2072053	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2073497	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2073500	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2229647	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2233476	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.82[EUR][1000 genomes]
rs2236940	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs2236941	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs2236943	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2236944	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs2236946	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2236949	0.84[AMR][1000 genomes]
rs2269430	0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2269432	0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2269568	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2282750	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2285043	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2285044	0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2298953	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs2298954	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs2624838	0.91[ASN][1000 genomes]
rs2624839	0.90[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs3213621	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35455589	0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35587949	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3774736	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3774739	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3774741	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3774748	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3774752	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3774753	0.81[CHB][hapmap];0.81[CHD][hapmap];0.81[MEX][hapmap]
rs3774754	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3774755	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4141407	0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688679	0.81[CHB][hapmap];1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs4688682	0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688683	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4688724	0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688725	0.82[EUR][1000 genomes]
rs4688728	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688732	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688733	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688734	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688736	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688738	0.85[AMR][1000 genomes]
rs4688741	0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688742	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688743	0.85[AMR][1000 genomes]
rs4688744	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4688746	0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4688747	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57944420	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57978992	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58137261	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58181992	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58191283	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60276643	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72932959	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72932987	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7645537	0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9311449	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9681992	0.83[AMR][1000 genomes]
rs9830408	0.81[CHB][hapmap]
rs9882618	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9883222	0.81[CHB][hapmap];0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834690	chr3:50101835-50267584	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv515986	chr3:50104307-50267584	Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv432418	chr3:50114496-50224196	Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1001775	chr3:50129479-50311666	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv876768	chr3:50144951-50267584	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
7	nsv1013949	chr3:50151712-50339163	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv590250	chr3:50153356-50332697	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv876769	chr3:50155468-50408398	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
10	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
11	esv1793751	chr3:50157364-50476363	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
12	esv1828162	chr3:50157364-50506151	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
13	nsv590251	chr3:50158774-50337422	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
14	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
15	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
16	nsv523560	chr3:50172397-50339163	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
17	nsv460529	chr3:50178011-50324672	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv460530	chr3:50178011-50324672	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
19	nsv590252	chr3:50178011-50324672	Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
20	nsv1002916	chr3:50187646-50311666	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
21	nsv536564	chr3:50187646-50311666	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
22	nsv1014256	chr3:50187646-50339163	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
23	nsv536565	chr3:50187646-50339163	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
24	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
25	nsv590253	chr3:50196418-50337422	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50193600-50197800	Weak transcription	Fetal Heart	heart
2	chr3:50193600-50197800	Weak transcription	Small Intestine	intestine
3	chr3:50194200-50203800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:50194200-50208800	Weak transcription	Pancreas	Pancrea
5	chr3:50194400-50197000	Flanking Active TSS	HMEC	breast
6	chr3:50194400-50197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:50194400-50199000	Enhancers	Stomach Mucosa	stomach
8	chr3:50194400-50201000	Weak transcription	Psoas Muscle	Psoas
9	chr3:50194600-50199000	Enhancers	Fetal Brain Male	brain
10	chr3:50194800-50196800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:50194800-50196800	Bivalent Enhancer	Fetal Intestine Small	intestine
12	chr3:50194800-50196800	Enhancers	Fetal Muscle Leg	muscle
13	chr3:50194800-50197200	Enhancers	K562	blood
14	chr3:50194800-50200800	Weak transcription	Brain Angular Gyrus	brain
15	chr3:50194800-50200800	Enhancers	Colon Smooth Muscle	Colon
16	chr3:50194800-50200800	Weak transcription	NHDF-Ad	bronchial
17	chr3:50194800-50202600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:50194800-50207600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr3:50195000-50196800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:50195000-50196800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr3:50195000-50196800	Enhancers	A549	lung
22	chr3:50195000-50197000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:50195000-50197000	Enhancers	Fetal Thymus	thymus
24	chr3:50195000-50197200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:50195000-50197400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:50195000-50197800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:50195000-50198000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:50195000-50198200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:50195000-50198400	Enhancers	HUVEC	blood vessel
30	chr3:50195000-50201200	Enhancers	Adipose Nuclei	Adipose
31	chr3:50195200-50197000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:50195200-50197200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:50195200-50199000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr3:50195400-50196800	Enhancers	Brain Cingulate Gyrus	brain
35	chr3:50195400-50197200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:50195400-50210200	Genic enhancers	Fetal Stomach	stomach
37	chr3:50195400-50210600	Enhancers	Left Ventricle	heart
38	chr3:50195400-50210800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:50195600-50197400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr3:50195600-50197800	Weak transcription	Colonic Mucosa	Colon
41	chr3:50195600-50198800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:50195600-50200400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:50195800-50196800	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr3:50195800-50196800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:50195800-50197000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr3:50195800-50197400	Transcr. at gene 5' and 3'	NHEK	skin
47	chr3:50195800-50198000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:50195800-50198200	Weak transcription	NHLF	lung
49	chr3:50195800-50201000	Weak transcription	Thymus	Thymus
50	chr3:50196000-50196800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links