Variant report

Variant	rs72932959
Chromosome Location	chr3:50336292-50336293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:50335795-50338360	HepG2	liver:	n/a	n/a
2	TCF12	chr3:50336219-50337339	ECC-1	luminal epithelium:	n/a	chr3:50337141-50337151 chr3:50337076-50337083 chr3:50337308-50337317
3	MAX	chr3:50336168-50337372	GM12878	blood:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
4	MXI1	chr3:50336202-50337319	GM12878	blood:	n/a	n/a
5	TBP	chr3:50336234-50337747	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr3:50336255-50336935	GM12892	blood:	n/a	n/a
7	POLR2A	chr3:50335828-50337929	HepG2	liver:	n/a	n/a
8	E2F6	chr3:50336264-50336931	A549	lung:	n/a	n/a
9	POLR2A	chr3:50336044-50338389	HepG2	liver:	n/a	n/a
10	POLR2A	chr3:50336094-50337984	GM19099	blood:	n/a	n/a
11	POLR2A	chr3:50336101-50338003	HCT-116	colon:	n/a	n/a
12	POLR2A	chr3:50335773-50338119	K562	blood:	n/a	n/a
13	SIN3AK20	chr3:50336176-50336424	HepG2	liver:	n/a	n/a
14	POLR2A	chr3:50335711-50338284	HL-60	blood:	n/a	n/a
15	POLR2A	chr3:50336174-50337537	ECC-1	luminal epithelium:	n/a	n/a
16	HDAC2	chr3:50336181-50336784	HepG2	liver:	n/a	chr3:50336591-50336600
17	NRF1	chr3:50336232-50337652	SK-N-SH	brain:	n/a	chr3:50336380-50336389
18	POLR2A	chr3:50335760-50338326	HepG2	liver:	n/a	n/a
19	POLR2A	chr3:50336232-50336953	HCT-116	colon:	n/a	n/a
20	SP1	chr3:50336064-50337371	H1-hESC	embryonic stem cell:	n/a	chr3:50337065-50337077 chr3:50336202-50336214 chr3:50336965-50336977 chr3:50336896-50336908 chr3:50337065-50337077 chr3:50337066-50337075 chr3:50336380-50336390 chr3:50337097-50337106 chr3:50337098-50337111 chr3:50337097-50337106 chr3:50336204-50336213 chr3:50337096-50337108 chr3:50336381-50336390 chr3:50336965-50336977 chr3:50336203-50336217 chr3:50336913-50336922 chr3:50337066-50337080 chr3:50336380-50336390 chr3:50337097-50337107 chr3:50337096-50337108 chr3:50337098-50337107 chr3:50336897-50336906 chr3:50337067-50337076 chr3:50336380-50336389 chr3:50336896-50336908 chr3:50336379-50336391 chr3:50336379-50336391 chr3:50336367-50336379 chr3:50336440-50336454 chr3:50336966-50336980 chr3:50336368-50336378
21	RELA	chr3:50336146-50337026	GM10847	blood:	n/a	n/a
22	POLR2A	chr3:50336048-50337467	GM18505	blood:	n/a	n/a
23	HCFC1	chr3:50335896-50338321	Hela-S3	cervix:	n/a	n/a
24	ETS1	chr3:50336127-50336896	K562	blood:	n/a	chr3:50336293-50336308
25	IRF1	chr3:50336194-50337419	K562	blood:	n/a	chr3:50337063-50337077 chr3:50336894-50336908 chr3:50336379-50336393 chr3:50336963-50336977 chr3:50337094-50337108
26	CHD1	chr3:50336264-50336804	GM12878	blood:	n/a	n/a
27	RCOR1	chr3:50335885-50337415	K562	blood:	n/a	n/a
28	SIN3A	chr3:50336248-50337333	H1-hESC	embryonic stem cell:	n/a	chr3:50336813-50336822 chr3:50337088-50337101
29	SP4	chr3:50336159-50336892	H1-hESC	embryonic stem cell:	n/a	chr3:50336377-50336393
30	MAZ	chr3:50336250-50337256	HepG2	liver:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
31	SIN3AK20	chr3:50336189-50336926	PANC-1	pancreas:	n/a	n/a
32	POLR2A	chr3:50336073-50337348	GM19193	blood:	n/a	n/a
33	SIN3AK20	chr3:50336153-50336967	K562	blood:	n/a	n/a
34	JUND	chr3:50335875-50337502	K562	blood:	n/a	chr3:50336924-50336936 chr3:50337233-50337242
35	ELF1	chr3:50336143-50336438	K562	blood:	n/a	chr3:50336324-50336336
36	REST	chr3:50336153-50337715	H1-neurons	neurons:	n/a	chr3:50336324-50336337 chr3:50336199-50336212 chr3:50336711-50336724 chr3:50336813-50336823
37	MAX	chr3:50336265-50337373	SK-N-SH	brain:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
38	MYC	chr3:50336226-50337998	K562	blood:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
39	POLR2A	chr3:50336139-50337832	HUVEC	blood vessel:	n/a	n/a
40	CHD2	chr3:50336263-50337712	GM12878	blood:	n/a	n/a
41	SP1	chr3:50336109-50337215	GM12878	blood:	n/a	chr3:50337065-50337077 chr3:50336202-50336214 chr3:50336965-50336977 chr3:50336896-50336908 chr3:50337065-50337077 chr3:50337066-50337075 chr3:50336380-50336390 chr3:50337097-50337106 chr3:50337098-50337111 chr3:50337097-50337106 chr3:50336204-50336213 chr3:50337096-50337108 chr3:50336381-50336390 chr3:50336965-50336977 chr3:50336203-50336217 chr3:50336913-50336922 chr3:50337066-50337080 chr3:50336380-50336390 chr3:50337097-50337107 chr3:50337096-50337108 chr3:50337098-50337107 chr3:50336897-50336906 chr3:50337067-50337076 chr3:50336380-50336389 chr3:50336896-50336908 chr3:50336379-50336391 chr3:50336379-50336391 chr3:50336367-50336379 chr3:50336440-50336454 chr3:50336966-50336980 chr3:50336368-50336378
42	SREBP1	chr3:50336060-50337419	HepG2	liver:	n/a	n/a
43	HDAC2	chr3:50336167-50336626	H1-hESC	embryonic stem cell:	n/a	chr3:50336591-50336600
44	YY1	chr3:50336261-50336497	HCT-116	colon:	n/a	chr3:50336340-50336349
45	MXI1	chr3:50336103-50337597	K562	blood:	n/a	n/a
46	MYC	chr3:50336255-50337635	Hela-S3	cervix:	n/a	chr3:50336440-50336450 chr3:50336380-50336390
47	CTCF	chr3:50336220-50336370	HCT-116	colon:	n/a	n/a
48	POLR2A	chr3:50336046-50337860	GM12878	blood:	n/a	n/a
49	TBL1XR1	chr3:50336286-50336817	K562	blood:	n/a	n/a
50	MYC	chr3:50336222-50337435	K562	blood:	n/a	chr3:50336440-50336450 chr3:50336380-50336390

No.	Distal block	Cell Line	Cell type
1	chr10:96305128..96305906-chr3:50336255..50337029,2	Hela-S3	cervix:
2	chr3:50308810..50310913-chr3:50335251..50336783,2	MCF-7	breast:
3	chr3:50296030..50318456-chr3:50318822..50339499,66	MCF-7	breast:
4	chr3:50334511..50339320-chr3:50364012..50367102,8	MCF-7	breast:
5	chr3:50335402..50338508-chr3:50371973..50376083,5	K562	blood:
6	chr3:50310399..50313142-chr3:50335615..50338582,3	K562	blood:
7	chr3:50327926..50342388-chr3:50350886..50359960,36	MCF-7	breast:
8	chr3:50324564..50342616-chr3:50350801..50362499,49	MCF-7	breast:
9	chr1:150551439..150552084-chr3:50336152..50336806,2	NB4	blood:
10	chr3:50334885..50342502-chr3:50352987..50366859,26	K562	blood:
11	chr3:50295925..50299690-chr3:50335868..50338319,4	K562	blood:
12	chr3:50333907..50338508-chr3:50371973..50376030,7	K562	blood:
13	chr3:50297731..50299690-chr3:50335668..50338319,3	K562	blood:
14	chr3:50335131..50340487-chr3:50360694..50367461,13	K562	blood:
15	chr3:50335266..50337009-chr6:27114656..27117147,2	K562	blood:
16	chr3:50334334..50341950-chr3:50357130..50360296,11	K562	blood:
17	chr3:50272615..50275191-chr3:50335158..50337593,2	MCF-7	breast:

Variant related genes	Relation type
NAT6	TF binding region
HYAL3	TF binding region
ENSG00000114353	Chromatin interaction
ENSG00000119969	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000114383	Chromatin interaction
ENSG00000068028	Chromatin interaction
ENSG00000232352	Chromatin interaction
ENSG00000068001	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000179564	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000012171	Chromatin interaction
ENSG00000230454	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11130248	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12054052	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12054403	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12485286	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12485390	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12485909	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12487392	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12488235	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12488302	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490809	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12490837	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12492683	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12492880	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12493693	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12494414	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12495261	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496815	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12497018	0.92[ASN][1000 genomes]
rs12498048	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12721544	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2006199	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2021734	0.82[AMR][1000 genomes]
rs2071203	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2071204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071801	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2071804	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2072053	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2072054	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2073497	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2073500	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2229647	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2233476	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2236940	0.87[ASN][1000 genomes]
rs2236941	0.87[ASN][1000 genomes]
rs2236943	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2236944	0.90[ASN][1000 genomes]
rs2236946	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2236949	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2269430	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2269432	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269568	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2269569	0.84[ASN][1000 genomes]
rs2282750	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2285043	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2285044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298953	0.88[ASN][1000 genomes]
rs2298954	0.88[ASN][1000 genomes]
rs3213621	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35455589	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35587949	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3774736	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3774739	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3774741	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3774748	0.88[AMR][1000 genomes]
rs3774752	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3774753	1.00[ASN][1000 genomes]
rs3774754	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3774755	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4141407	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4688679	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4688682	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4688683	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4688724	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4688725	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4688728	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4688732	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4688733	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4688734	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688736	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4688738	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4688741	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4688742	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4688743	0.87[AMR][1000 genomes]
rs4688744	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4688746	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688747	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57944420	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57978992	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58137261	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58181992	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58191283	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58648044	0.87[ASN][1000 genomes]
rs60276643	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72932987	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7645537	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9311449	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9681992	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9830408	0.89[ASN][1000 genomes]
rs9882618	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9883222	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv1013949	chr3:50151712-50339163	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv876769	chr3:50155468-50408398	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	esv1793751	chr3:50157364-50476363	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
6	esv1828162	chr3:50157364-50506151	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
7	nsv590251	chr3:50158774-50337422	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
9	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
10	nsv523560	chr3:50172397-50339163	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
11	nsv1014256	chr3:50187646-50339163	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
12	nsv536565	chr3:50187646-50339163	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
14	nsv590253	chr3:50196418-50337422	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
15	esv2757870	chr3:50198478-50371377	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
16	esv2759148	chr3:50198478-50371377	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
17	nsv834692	chr3:50198485-50393464	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
18	nsv590254	chr3:50243510-50388607	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
19	nsv460531	chr3:50247824-50436827	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
20	nsv590255	chr3:50247824-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
21	nsv876772	chr3:50255305-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv590257	chr3:50302830-50393640	Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
23	nsv590256	chr3:50302830-50420554	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
24	nsv876774	chr3:50302830-50436827	Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
25	nsv876773	chr3:50302830-50480131	Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
26	nsv834693	chr3:50302830-50507964	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
27	nsv876775	chr3:50324672-50504896	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50332400-50336600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:50335200-50336400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:50335200-50336600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:50335200-50338000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:50335400-50336400	Flanking Active TSS	Brain Angular Gyrus	brain
6	chr3:50335400-50336600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr3:50335400-50336600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr3:50335400-50336600	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr3:50335600-50336400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr3:50335600-50336400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:50335600-50336400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:50335600-50336400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:50335600-50336400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr3:50335600-50336400	Flanking Active TSS	HMEC	breast
15	chr3:50335600-50336400	Flanking Active TSS	NHEK	skin
16	chr3:50335600-50336400	Flanking Active TSS	NHLF	lung
17	chr3:50335600-50336600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr3:50335600-50336600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr3:50335600-50336600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr3:50335600-50336600	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr3:50335600-50336600	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr3:50335600-50336600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr3:50335600-50336800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr3:50335600-50336800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:50335600-50336800	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr3:50335600-50336800	Flanking Active TSS	Dnd41	blood
27	chr3:50335600-50336800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr3:50335600-50337200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:50335600-50337400	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr3:50335800-50336400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:50335800-50336400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr3:50335800-50336400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:50335800-50336400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr3:50335800-50336400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:50335800-50336400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:50335800-50336400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
37	chr3:50335800-50336400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr3:50335800-50336400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:50335800-50336400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:50335800-50336400	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr3:50335800-50336400	Enhancers	Fetal Heart	heart
42	chr3:50335800-50336400	Flanking Active TSS	Fetal Intestine Large	intestine
43	chr3:50335800-50336400	Flanking Active TSS	HSMM	muscle
44	chr3:50335800-50336400	Flanking Active TSS	NH-A	brain
45	chr3:50335800-50336600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr3:50335800-50336600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:50335800-50336600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr3:50335800-50336600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr3:50335800-50336600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:50335800-50336600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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