Variant report

Variant rs58648044
Chromosome Location chr3:50248954-50248955
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:50244000-50251200 Enhancers Pancreas Pancrea
2 chr3:50244000-50254600 Weak transcription Esophagus oesophagus
3 chr3:50244000-50263800 Weak transcription Right Atrium heart
4 chr3:50244200-50263800 Weak transcription Left Ventricle heart
5 chr3:50244400-50249600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr3:50244400-50263800 Weak transcription Right Ventricle heart
7 chr3:50246400-50249200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr3:50246400-50249400 Weak transcription Brain Angular Gyrus brain
9 chr3:50246400-50249600 Weak transcription Brain Inferior Temporal Lobe brain
10 chr3:50246600-50249400 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr3:50246600-50249400 Weak transcription Brain Substantia Nigra brain
12 chr3:50246600-50250600 Weak transcription Fetal Muscle Leg muscle
13 chr3:50246800-50251400 Enhancers Skeletal Muscle Male skeletal muscle
14 chr3:50247200-50249200 Enhancers HUES6 Cell Line embryonic stem cell
15 chr3:50247400-50249200 Weak transcription Adipose Nuclei Adipose
16 chr3:50247400-50250000 Enhancers Fetal Intestine Small intestine
17 chr3:50247400-50250200 Enhancers Fetal Intestine Large intestine
18 chr3:50247400-50250400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
19 chr3:50247400-50264400 Weak transcription Ovary ovary
20 chr3:50247600-50249000 Enhancers Small Intestine intestine
21 chr3:50247600-50249400 Weak transcription Brain Cingulate Gyrus brain
22 chr3:50247600-50250600 Weak transcription Fetal Brain Female brain
23 chr3:50247800-50249000 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
24 chr3:50247800-50249400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr3:50247800-50249400 Enhancers HUES48 Cell Line embryonic stem cell
26 chr3:50248000-50249200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr3:50248000-50249600 Enhancers iPS-18 Cell Line embryonic stem cell
28 chr3:50248000-50250000 Enhancers H1 Cell Line embryonic stem cell
29 chr3:50248000-50250400 Enhancers Fetal Adrenal Gland Adrenal Gland
30 chr3:50248200-50250600 Enhancers Psoas Muscle Psoas
31 chr3:50248200-50253000 Enhancers Brain Hippocampus Middle brain
32 chr3:50248400-50255200 Weak transcription Spleen Spleen
33 chr3:50248600-50249600 Weak transcription iPS-15b Cell Line embryonic stem cell
34 chr3:50248600-50249600 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr3:50248800-50249000 Flanking Active TSS Liver Liver
36 chr3:50248800-50249200 Weak transcription Brain Anterior Caudate brain
37 chr3:50248800-50249400 Enhancers HepG2 liver
38 chr3:50248800-50249600 Weak transcription iPS-20b Cell Line embryonic stem cell
39 chr3:50248800-50249600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr3:50248800-50249600 Weak transcription Stomach Mucosa stomach
41 chr3:50248800-50250000 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin

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