Variant report

Variant	rs9830408
Chromosome Location	chr3:50294551-50294552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:50294426-50294810	H1-hESC	embryonic stem cell:	n/a	chr3:50294598-50294617
2	CTCF	chr3:50294482-50294749	H1-hESC	embryonic stem cell:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
3	CTCF	chr3:50294522-50294722	GM12892	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
4	CTCF	chr3:50294507-50294733	A549	lung:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
5	ZKSCAN1	chr3:50294354-50294645	Hela-S3	cervix:	n/a	n/a
6	RAD21	chr3:50294229-50295034	HCT-116	colon:	n/a	chr3:50294598-50294617
7	CTCF	chr3:50294491-50294766	Spleen_OC	spleen:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
8	CTCF	chr3:50294500-50294650	AG09309	skin:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
9	CTCF	chr3:50294540-50294690	HMEC	breast:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
10	CTCF	chr3:50294540-50294690	HBMEC	blood vessel:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
11	CTCF	chr3:50294506-50294733	K562	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
12	CTCF	chr3:50294540-50294690	HRE	kidney:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
13	POLR2A	chr3:50294506-50294910	Hela-S3	cervix:	n/a	n/a
14	CTCF	chr3:50294500-50294650	GM12872	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
15	POLR2A	chr3:50294227-50295183	GM12892	blood:	n/a	n/a
16	POLR2A	chr3:50294548-50295117	GM12891	blood:	n/a	n/a
17	CTCF	chr3:50294500-50294650	GM06990	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
18	CTCF	chr3:50294512-50294752	ProgFib	skin:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
19	CTCF	chr3:50294540-50294690	HMF	breast:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
20	RAD21	chr3:50294400-50294811	IMR90	lung:	n/a	chr3:50294598-50294617
21	CTCF	chr3:50294520-50294670	GM12865	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
22	CTCF	chr3:50294520-50294670	GM12875	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
23	CTCF	chr3:50294540-50294690	GM12871	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
24	POLR2A	chr3:50294330-50295208	HL-60	blood:	n/a	n/a
25	CTCF	chr3:50294545-50294705	GM10248	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
26	USF2	chr3:50294431-50294826	Hela-S3	cervix:	n/a	n/a
27	RAD21	chr3:50294423-50294781	H1-hESC	embryonic stem cell:	n/a	chr3:50294598-50294617
28	CTCF	chr3:50294520-50294670	HMEC	breast:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
29	CTCF	chr3:50294506-50294752	Fibrobl	skin:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
30	CTCF	chr3:50294480-50294630	WI-38	lung:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
31	POLR2A	chr3:50294093-50295852	GM12878	blood:	n/a	n/a
32	CTCF	chr3:50294480-50294630	HEEpiC	esophagus:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
33	CTCFL	chr3:50294516-50294665	K562	blood:	n/a	n/a
34	CTCF	chr3:50294424-50294742	HepG2	liver:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
35	POLR2A	chr3:50294263-50294899	GM12891	blood:	n/a	n/a
36	CTCF	chr3:50294530-50294753	GM19239	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
37	CTCF	chr3:50294540-50294690	HCPEpiC	choroid plexus:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
38	CTCF	chr3:50294540-50294690	Hela-S3	cervix:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
39	CTCF	chr3:50294176-50294972	SK-N-SH	brain:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
40	CTCF	chr3:50294520-50294670	Caco-2	colon:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
41	MAZ	chr3:50294499-50294719	HepG2	liver:	n/a	n/a
42	CTCF	chr3:50294540-50294690	NHDF-neo	bronchial:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
43	CTCF	chr3:50294540-50294690	AG10803	skin:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
44	POLR2A	chr3:50294100-50296266	GM12892	blood:	n/a	n/a
45	CTCF	chr3:50294500-50294650	GM12873	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
46	POLR2A	chr3:50294456-50294571	H1-hESC	embryonic stem cell:	n/a	n/a
47	CTCF	chr3:50294517-50294721	Pancreas_OC	pancreas:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
48	CTCF	chr3:50294472-50294737	ECC-1	luminal epithelium:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
49	CTCF	chr3:50294472-50294748	GM19240	blood:	n/a	chr3:50294602-50294615 chr3:50294586-50294596 chr3:50294601-50294617 chr3:50294602-50294615 chr3:50294600-50294618
50	POLR2A	chr3:50294540-50294942	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:50291997..50295519-chr3:50296180..50299303,4	MCF-7	breast:
2	chr3:50293747..50295970-chr3:50606767..50608442,2	MCF-7	breast:
3	chr3:50232132..50232685-chr3:50294092..50294968,2	K562	blood:
4	chr3:50275833..50279919-chr3:50292841..50298987,5	MCF-7	breast:
5	chr3:50283167..50285280-chr3:50294305..50297270,3	MCF-7	breast:
6	chr3:50290143..50293966-chr3:50294360..50298503,5	K562	blood:
7	chr3:50272477..50276068-chr3:50288828..50297512,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230454	TF binding region
ENSG00000213600	Chromatin interaction
ENSG00000230454	Chromatin interaction
ENSG00000114735	Chromatin interaction
ENSG00000114353	Chromatin interaction
ENSG00000088543	Chromatin interaction

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs1005678	0.82[CHB][hapmap]
rs1034408	1.00[CEU][hapmap]
rs1034409	1.00[CEU][hapmap]
rs11130248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12054403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12485286	0.81[ASN][1000 genomes]
rs12485390	1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[ASN][1000 genomes]
rs12485909	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12487392	0.86[ASN][1000 genomes]
rs12488235	0.87[ASN][1000 genomes]
rs12488302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12490809	0.86[JPT][hapmap]
rs12492683	0.86[ASN][1000 genomes]
rs12492880	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12493693	0.88[ASN][1000 genomes]
rs12494414	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12495261	0.86[ASN][1000 genomes]
rs12496815	0.82[ASN][1000 genomes]
rs12497018	0.92[ASN][1000 genomes]
rs12498048	0.97[ASN][1000 genomes]
rs12632110	1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12721544	0.84[ASN][1000 genomes]
rs1894324	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs2006199	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2071203	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2071204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2071205	0.89[ASN][1000 genomes]
rs2071801	0.85[ASN][1000 genomes]
rs2071804	0.86[CHB][hapmap];0.96[JPT][hapmap];0.81[ASN][1000 genomes]
rs2072054	0.81[CHB][hapmap]
rs2073497	0.86[ASN][1000 genomes]
rs2073500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2157328	1.00[CEU][hapmap]
rs2187815	1.00[CEU][hapmap]
rs2229647	0.88[ASN][1000 genomes]
rs2233476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2236940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[ASN][1000 genomes]
rs2236941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[ASN][1000 genomes]
rs2236943	0.96[ASN][1000 genomes]
rs2236944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2236946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2236949	0.83[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2236950	0.83[JPT][hapmap]
rs2236969	1.00[CEU][hapmap]
rs2236972	1.00[CEU][hapmap]
rs2236977	1.00[CEU][hapmap]
rs2236978	1.00[CEU][hapmap]
rs2236982	1.00[CEU][hapmap]
rs2269430	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2269432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2269569	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2282750	0.96[ASN][1000 genomes]
rs2282757	1.00[CEU][hapmap]
rs2285043	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2285044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2298953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2298954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3213621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs35455589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs35587949	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs3774739	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs3774752	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs3774753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3774754	0.85[ASN][1000 genomes]
rs3774755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4141407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4688679	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4688682	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4688683	0.88[ASN][1000 genomes]
rs4688724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4688725	0.85[ASN][1000 genomes]
rs4688728	0.85[ASN][1000 genomes]
rs4688732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4688733	0.86[ASN][1000 genomes]
rs4688734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4688736	0.86[ASN][1000 genomes]
rs4688738	0.87[ASN][1000 genomes]
rs4688741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4688742	0.96[ASN][1000 genomes]
rs4688744	0.96[ASN][1000 genomes]
rs4688746	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs57944420	0.85[ASN][1000 genomes]
rs57978992	0.92[ASN][1000 genomes]
rs58181992	0.86[ASN][1000 genomes]
rs58648044	0.96[ASN][1000 genomes]
rs60276643	0.85[ASN][1000 genomes]
rs6446203	1.00[CEU][hapmap]
rs6767505	1.00[CEU][hapmap]
rs6770258	1.00[CEU][hapmap]
rs6770669	1.00[CEU][hapmap]
rs72932959	0.89[ASN][1000 genomes]
rs72932987	0.86[ASN][1000 genomes]
rs743754	1.00[CEU][hapmap]
rs743755	1.00[CEU][hapmap]
rs743859	1.00[CEU][hapmap]
rs7626470	1.00[CEU][hapmap]
rs7634307	1.00[CEU][hapmap]
rs7636862	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs7641224	1.00[CEU][hapmap]
rs7645537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7647409	1.00[CEU][hapmap]
rs886075	1.00[CEU][hapmap]
rs9311449	0.84[ASN][1000 genomes]
rs9817768	1.00[CEU][hapmap]
rs9828829	1.00[CEU][hapmap]
rs9837658	1.00[CEU][hapmap]
rs9852677	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9854585	1.00[CEU][hapmap]
rs9875873	1.00[CEU][hapmap]
rs9882618	0.85[ASN][1000 genomes]
rs9883222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9883635	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001775	chr3:50129479-50311666	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv1013949	chr3:50151712-50339163	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv590250	chr3:50153356-50332697	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv876769	chr3:50155468-50408398	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
7	esv1793751	chr3:50157364-50476363	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
8	esv1828162	chr3:50157364-50506151	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
9	nsv590251	chr3:50158774-50337422	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
10	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
11	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv523560	chr3:50172397-50339163	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv460529	chr3:50178011-50324672	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
14	nsv460530	chr3:50178011-50324672	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
15	nsv590252	chr3:50178011-50324672	Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
16	nsv1002916	chr3:50187646-50311666	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
17	nsv536564	chr3:50187646-50311666	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv1014256	chr3:50187646-50339163	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
19	nsv536565	chr3:50187646-50339163	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
20	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
21	nsv590253	chr3:50196418-50337422	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
22	esv2757870	chr3:50198478-50371377	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
23	esv2759148	chr3:50198478-50371377	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
24	nsv834692	chr3:50198485-50393464	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
25	nsv590254	chr3:50243510-50388607	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
26	nsv460531	chr3:50247824-50436827	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
27	nsv590255	chr3:50247824-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
28	nsv876772	chr3:50255305-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50284200-50297000	Genic enhancers	Fetal Muscle Trunk	muscle
2	chr3:50284400-50295000	Genic enhancers	Spleen	Spleen
3	chr3:50284400-50295800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:50284400-50297000	Genic enhancers	Fetal Muscle Leg	muscle
5	chr3:50284800-50300600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:50285200-50296000	Strong transcription	Dnd41	blood
7	chr3:50285200-50296600	Strong transcription	Thymus	Thymus
8	chr3:50286000-50296200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:50286800-50297000	Weak transcription	A549	lung
10	chr3:50287200-50296400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:50287600-50295400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:50287800-50297200	Weak transcription	Small Intestine	intestine
13	chr3:50288200-50294800	Strong transcription	Fetal Intestine Large	intestine
14	chr3:50288200-50295600	Strong transcription	Fetal Thymus	thymus
15	chr3:50288600-50296200	Strong transcription	Primary T cells from cord blood	blood
16	chr3:50288600-50296600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:50288800-50295800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
18	chr3:50288800-50296000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:50289000-50296000	Strong transcription	Rectal Smooth Muscle	rectum
20	chr3:50289000-50296200	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr3:50289000-50296200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:50289000-50296400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:50289000-50297000	Weak transcription	Fetal Heart	heart
24	chr3:50289000-50297000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
25	chr3:50289000-50297600	Genic enhancers	HUVEC	blood vessel
26	chr3:50289200-50296000	Strong transcription	Colonic Mucosa	Colon
27	chr3:50289400-50296000	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:50289400-50297000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:50289400-50297000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:50289400-50297200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:50289600-50295200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr3:50289600-50296200	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:50289600-50296200	Strong transcription	Ovary	ovary
34	chr3:50289800-50296400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:50289800-50296600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr3:50290000-50296800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr3:50290400-50295800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
38	chr3:50290600-50297000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr3:50291200-50295600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr3:50291200-50296200	Genic enhancers	Brain Inferior Temporal Lobe	brain
41	chr3:50291600-50296000	Genic enhancers	Brain Anterior Caudate	brain
42	chr3:50291600-50296800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:50292000-50295400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:50292400-50295800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr3:50292400-50296200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr3:50292400-50296600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:50292600-50295800	Strong transcription	Fetal Brain Female	brain
48	chr3:50292600-50296800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:50292600-50297000	Strong transcription	NHLF	lung
50	chr3:50292800-50295000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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