Variant report

Variant rs2072053
Chromosome Location chr3:50197092-50197093
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:50193600-50197800 Weak transcription Fetal Heart heart
2 chr3:50193600-50197800 Weak transcription Small Intestine intestine
3 chr3:50194200-50203800 Enhancers Skeletal Muscle Female skeletal muscle
4 chr3:50194200-50208800 Weak transcription Pancreas Pancrea
5 chr3:50194400-50197800 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr3:50194400-50199000 Enhancers Stomach Mucosa stomach
7 chr3:50194400-50201000 Weak transcription Psoas Muscle Psoas
8 chr3:50194600-50199000 Enhancers Fetal Brain Male brain
9 chr3:50194800-50197200 Enhancers K562 blood
10 chr3:50194800-50200800 Weak transcription Brain Angular Gyrus brain
11 chr3:50194800-50200800 Enhancers Colon Smooth Muscle Colon
12 chr3:50194800-50200800 Weak transcription NHDF-Ad bronchial
13 chr3:50194800-50202600 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
14 chr3:50194800-50207600 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
15 chr3:50195000-50197200 Enhancers HUES6 Cell Line embryonic stem cell
16 chr3:50195000-50197400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr3:50195000-50197800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr3:50195000-50198000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr3:50195000-50198200 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr3:50195000-50198400 Enhancers HUVEC blood vessel
21 chr3:50195000-50201200 Enhancers Adipose Nuclei Adipose
22 chr3:50195200-50197200 Weak transcription H9 Cell Line embryonic stem cell
23 chr3:50195200-50199000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr3:50195400-50197200 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr3:50195400-50210200 Genic enhancers Fetal Stomach stomach
26 chr3:50195400-50210600 Enhancers Left Ventricle heart
27 chr3:50195400-50210800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr3:50195600-50197400 Weak transcription Rectal Smooth Muscle rectum
29 chr3:50195600-50197800 Weak transcription Colonic Mucosa Colon
30 chr3:50195600-50198800 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr3:50195600-50200400 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr3:50195800-50197400 Transcr. at gene 5' and 3' NHEK skin
33 chr3:50195800-50198000 Weak transcription iPS-18 Cell Line embryonic stem cell
34 chr3:50195800-50198200 Weak transcription NHLF lung
35 chr3:50195800-50201000 Weak transcription Thymus Thymus
36 chr3:50196000-50197200 Weak transcription Brain Germinal Matrix brain
37 chr3:50196000-50197400 Weak transcription Gastric stomach
38 chr3:50196000-50197400 Enhancers Spleen Spleen
39 chr3:50196000-50200800 Weak transcription HSMM muscle
40 chr3:50196200-50197200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr3:50196200-50197200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr3:50196200-50197200 Enhancers Esophagus oesophagus
43 chr3:50196200-50197400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr3:50196200-50198400 Weak transcription NH-A brain
45 chr3:50196200-50199200 Genic enhancers Placenta Placenta
46 chr3:50196200-50199400 Enhancers Fetal Muscle Trunk muscle
47 chr3:50196200-50199600 Weak transcription Muscle Satellite Cultured Cells --
48 chr3:50196200-50211600 Enhancers Rectal Mucosa Donor 31 rectum
49 chr3:50196400-50197400 Genic enhancers Skeletal Muscle Male skeletal muscle
50 chr3:50196400-50197800 Genic enhancers Breast Myoepithelial Primary Cells Breast

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