Variant report
Variant | rs61040619 |
---|---|
Chromosome Location | chr13:38595439-38595440 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:38593255..38596219-chr13:38596558..38598612,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs56784033 | 1.00[AMR][1000 genomes] |
rs57275756 | 1.00[AMR][1000 genomes] |
rs57496998 | 1.00[AMR][1000 genomes] |
rs57868267 | 1.00[AMR][1000 genomes] |
rs59015057 | 1.00[AMR][1000 genomes] |
rs61056694 | 1.00[AMR][1000 genomes] |
rs73452148 | 1.00[AMR][1000 genomes] |
rs73452150 | 1.00[AMR][1000 genomes] |
rs73452161 | 1.00[AMR][1000 genomes] |
rs73452163 | 1.00[AMR][1000 genomes] |
rs73452164 | 1.00[AMR][1000 genomes] |
rs73452171 | 1.00[AMR][1000 genomes] |
rs73452181 | 1.00[AMR][1000 genomes] |
rs73452183 | 1.00[AMR][1000 genomes] |
rs73456062 | 1.00[AMR][1000 genomes] |
rs73456069 | 1.00[AMR][1000 genomes] |
rs73456070 | 1.00[AMR][1000 genomes] |
rs7991711 | 1.00[AMR][1000 genomes] |
rs7997641 | 1.00[AMR][1000 genomes] |
rs7998002 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv915901 | chr13:38199035-39032633 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
2 | nsv869125 | chr13:38550449-39132813 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
3 | nsv949406 | chr13:38561474-39033484 | Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
4 | nsv899999 | chr13:38582178-38636966 | ZNF genes & repeats Enhancers Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:38594200-38597600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr13:38594800-38596600 | ZNF genes & repeats | Liver | Liver |