Variant report

Variant	rs73456069
Chromosome Location	chr13:38786683-38786684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56784033	1.00[AMR][1000 genomes]
rs57275756	1.00[AMR][1000 genomes]
rs57496998	1.00[AMR][1000 genomes]
rs57868267	1.00[AMR][1000 genomes]
rs59015057	1.00[AMR][1000 genomes]
rs61040619	1.00[AMR][1000 genomes]
rs61056694	1.00[AMR][1000 genomes]
rs73452148	1.00[AMR][1000 genomes]
rs73452150	1.00[AMR][1000 genomes]
rs73452161	1.00[AMR][1000 genomes]
rs73452163	1.00[AMR][1000 genomes]
rs73452164	1.00[AMR][1000 genomes]
rs73452171	1.00[AMR][1000 genomes]
rs73452181	1.00[AMR][1000 genomes]
rs73452183	1.00[AMR][1000 genomes]
rs73456062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456078	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456083	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7997641	1.00[AMR][1000 genomes]
rs7998002	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38777600-38787200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38785800-38789200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:38785800-38790400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:38786000-38790000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:38786200-38789400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:38786600-38788200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links