Variant report

Variant	rs7998002
Chromosome Location	chr13:38676873-38676874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56784033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57275756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57496998	1.00[AMR][1000 genomes]
rs57868267	1.00[AMR][1000 genomes]
rs59015057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61040619	1.00[AMR][1000 genomes]
rs61056694	1.00[AMR][1000 genomes]
rs73452148	1.00[AMR][1000 genomes]
rs73452150	1.00[AMR][1000 genomes]
rs73452161	1.00[AMR][1000 genomes]
rs73452163	1.00[AMR][1000 genomes]
rs73452164	1.00[AMR][1000 genomes]
rs73452171	1.00[AMR][1000 genomes]
rs73452181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73452183	1.00[AMR][1000 genomes]
rs73456062	1.00[AMR][1000 genomes]
rs73456069	1.00[AMR][1000 genomes]
rs73456070	1.00[AMR][1000 genomes]
rs73456078	1.00[AMR][1000 genomes]
rs73456083	1.00[AMR][1000 genomes]
rs7991711	1.00[AMR][1000 genomes]
rs7997641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900000	chr13:38608928-38710260	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900001	chr13:38619750-38710260	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900002	chr13:38628041-38710260	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv900003	chr13:38648788-38710260	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv561511	chr13:38655046-38701046	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv1046868	chr13:38672762-38711877	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38664200-38678000	Weak transcription	Psoas Muscle	Psoas
2	chr13:38665400-38678600	Weak transcription	Pancreas	Pancrea

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