Variant report

Variant	rs61049987
Chromosome Location	chr11:45380202-45380203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11038405	0.85[AFR][1000 genomes]
rs4073406	1.00[AMR][1000 genomes]
rs56684421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58968412	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61360793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72897458	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45378000-45387800	Weak transcription	Lung	lung
2	chr11:45378200-45387200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:45378200-45387800	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links