Variant report

Variant	rs11038405
Chromosome Location	chr11:45361433-45361434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45354038..45357345-chr11:45359255..45361825,3	K562	blood:
2	chr11:45361263..45362212-chr11:45793106..45794141,7	K562	blood:
3	chr11:45361279..45362163-chr11:45793016..45794170,5	MCF-7	breast:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10160472	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10160502	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10160694	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10160834	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10501315	0.86[EUR][1000 genomes]
rs10838454	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10838455	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10838479	0.86[EUR][1000 genomes]
rs11038403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038404	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038406	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038409	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11038411	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038417	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038420	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038423	0.98[EUR][1000 genomes]
rs11038424	0.98[EUR][1000 genomes]
rs11038426	0.98[EUR][1000 genomes]
rs11038427	0.98[EUR][1000 genomes]
rs11038429	0.95[EUR][1000 genomes]
rs11038431	0.92[EUR][1000 genomes]
rs11038432	0.92[EUR][1000 genomes]
rs11038433	0.92[EUR][1000 genomes]
rs11038434	0.90[EUR][1000 genomes]
rs11038435	0.90[EUR][1000 genomes]
rs11038437	0.90[EUR][1000 genomes]
rs11038442	0.90[EUR][1000 genomes]
rs11038443	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11038444	0.90[EUR][1000 genomes]
rs11038450	0.88[EUR][1000 genomes]
rs11038451	0.88[EUR][1000 genomes]
rs11038455	0.88[EUR][1000 genomes]
rs11038456	0.88[EUR][1000 genomes]
rs11038457	0.88[EUR][1000 genomes]
rs11038458	0.88[EUR][1000 genomes]
rs11038459	0.86[EUR][1000 genomes]
rs11038461	0.85[EUR][1000 genomes]
rs11038462	0.88[EUR][1000 genomes]
rs11038465	0.88[EUR][1000 genomes]
rs11038466	0.88[EUR][1000 genomes]
rs11038467	0.88[EUR][1000 genomes]
rs11038469	0.88[EUR][1000 genomes]
rs11038471	0.86[EUR][1000 genomes]
rs11038472	0.85[EUR][1000 genomes]
rs11038473	0.88[EUR][1000 genomes]
rs11038474	0.88[EUR][1000 genomes]
rs11038475	0.88[EUR][1000 genomes]
rs11038477	0.88[EUR][1000 genomes]
rs11038479	0.88[EUR][1000 genomes]
rs11038481	0.88[EUR][1000 genomes]
rs11038482	0.88[EUR][1000 genomes]
rs11038483	0.86[EUR][1000 genomes]
rs11038485	0.85[EUR][1000 genomes]
rs11038486	0.86[EUR][1000 genomes]
rs11038487	0.86[EUR][1000 genomes]
rs11038491	0.82[EUR][1000 genomes]
rs11038492	0.86[EUR][1000 genomes]
rs11038493	0.86[EUR][1000 genomes]
rs11038494	0.86[EUR][1000 genomes]
rs11038495	0.86[EUR][1000 genomes]
rs11038496	0.86[EUR][1000 genomes]
rs11038497	0.86[EUR][1000 genomes]
rs11038498	0.86[EUR][1000 genomes]
rs11038522	1.00[CEU][hapmap]
rs1107209	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11599949	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11599993	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11601006	0.98[EUR][1000 genomes]
rs11601410	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11604510	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12278000	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12360696	1.00[CEU][hapmap]
rs12361372	0.88[EUR][1000 genomes]
rs12363740	0.85[EUR][1000 genomes]
rs12364278	0.88[EUR][1000 genomes]
rs12364661	0.88[EUR][1000 genomes]
rs12365374	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12365430	0.88[EUR][1000 genomes]
rs12365455	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12365467	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12365982	0.86[EUR][1000 genomes]
rs12366014	1.00[CEU][hapmap]
rs1488668	0.86[EUR][1000 genomes]
rs1488669	0.86[EUR][1000 genomes]
rs1488670	0.86[EUR][1000 genomes]
rs17723819	0.88[EUR][1000 genomes]
rs17724032	0.86[EUR][1000 genomes]
rs17724086	0.86[EUR][1000 genomes]
rs17785901	0.86[EUR][1000 genomes]
rs17786039	1.00[CEU][hapmap]
rs1844150	0.88[EUR][1000 genomes]
rs2044877	0.97[EUR][1000 genomes]
rs56684421	0.91[AFR][1000 genomes]
rs58968412	0.82[AFR][1000 genomes]
rs61049987	0.85[AFR][1000 genomes]
rs72897413	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897414	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897422	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897428	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897458	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897475	0.92[EUR][1000 genomes]
rs72899480	0.90[EUR][1000 genomes]
rs72899488	0.88[EUR][1000 genomes]
rs72901403	0.88[EUR][1000 genomes]
rs72901422	0.88[EUR][1000 genomes]
rs72901426	0.88[EUR][1000 genomes]
rs72901447	0.88[EUR][1000 genomes]
rs72901450	0.88[EUR][1000 genomes]
rs72901459	0.88[EUR][1000 genomes]
rs72901500	0.88[EUR][1000 genomes]
rs72903035	0.88[EUR][1000 genomes]
rs72903086	0.88[EUR][1000 genomes]
rs72903094	0.88[EUR][1000 genomes]
rs72905021	0.86[EUR][1000 genomes]
rs72905025	0.86[EUR][1000 genomes]
rs72905092	0.86[EUR][1000 genomes]
rs72905093	0.86[EUR][1000 genomes]
rs72906922	0.86[EUR][1000 genomes]
rs72906947	0.83[EUR][1000 genomes]
rs971897	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45359400-45362200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:45359800-45361600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:45359800-45361600	Weak transcription	NHEK	skin
4	chr11:45359800-45361800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:45360000-45361800	Weak transcription	HMEC	breast
6	chr11:45360600-45362400	Enhancers	Fetal Brain Male	brain
7	chr11:45360800-45361600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:45361000-45362200	Enhancers	Fetal Muscle Leg	muscle
9	chr11:45361200-45361600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr11:45361200-45361600	Flanking Active TSS	Fetal Brain Female	brain
11	chr11:45361200-45361800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr11:45361200-45362000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr11:45361200-45362200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:45361200-45362200	Enhancers	Fetal Stomach	stomach
15	chr11:45361200-45362200	Enhancers	Fetal Thymus	thymus
16	chr11:45361200-45364400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:45361400-45361600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr11:45361400-45361600	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr11:45361400-45361600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:45361400-45361600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr11:45361400-45361600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:45361400-45361600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:45361400-45361600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:45361400-45361600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr11:45361400-45361600	Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr11:45361400-45361600	Active TSS	Brain Cingulate Gyrus	brain
27	chr11:45361400-45361600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:45361400-45361600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr11:45361400-45361600	Active TSS	Fetal Intestine Small	intestine
30	chr11:45361400-45361600	Active TSS	Fetal Muscle Trunk	muscle
31	chr11:45361400-45361600	Active TSS	Right Atrium	heart
32	chr11:45361400-45361600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr11:45361400-45361600	Enhancers	Thymus	Thymus
34	chr11:45361400-45361600	Flanking Active TSS	A549	lung
35	chr11:45361400-45361600	Bivalent Enhancer	HUVEC	blood vessel
36	chr11:45361400-45361800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
37	chr11:45361400-45361800	Active TSS	H9 Cell Line	embryonic stem cell
38	chr11:45361400-45361800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:45361400-45361800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr11:45361400-45361800	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr11:45361400-45361800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:45361400-45361800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:45361400-45361800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:45361400-45361800	Active TSS	Brain Anterior Caudate	brain
45	chr11:45361400-45361800	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr11:45361400-45361800	Active TSS	Fetal Kidney	kidney
47	chr11:45361400-45361800	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr11:45361400-45361800	Enhancers	Right Ventricle	heart
49	chr11:45361400-45361800	Active TSS	Stomach Smooth Muscle	stomach
50	chr11:45361400-45361800	Active TSS	GM12878-XiMat	blood

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