Variant report

Variant	rs17724086
Chromosome Location	chr11:45523183-45523184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10160472	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10160502	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10160694	0.88[EUR][1000 genomes]
rs10160834	0.88[EUR][1000 genomes]
rs10501315	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10838454	0.88[EUR][1000 genomes]
rs10838455	0.88[EUR][1000 genomes]
rs10838479	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038403	0.82[EUR][1000 genomes]
rs11038404	0.86[EUR][1000 genomes]
rs11038405	0.86[EUR][1000 genomes]
rs11038406	0.88[EUR][1000 genomes]
rs11038409	0.86[EUR][1000 genomes]
rs11038411	0.88[EUR][1000 genomes]
rs11038417	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11038420	0.88[EUR][1000 genomes]
rs11038423	0.88[EUR][1000 genomes]
rs11038424	0.88[EUR][1000 genomes]
rs11038426	0.88[EUR][1000 genomes]
rs11038427	0.88[EUR][1000 genomes]
rs11038429	0.91[EUR][1000 genomes]
rs11038431	0.95[EUR][1000 genomes]
rs11038432	0.95[EUR][1000 genomes]
rs11038433	0.95[EUR][1000 genomes]
rs11038434	0.96[EUR][1000 genomes]
rs11038435	0.96[EUR][1000 genomes]
rs11038437	0.96[EUR][1000 genomes]
rs11038442	0.96[EUR][1000 genomes]
rs11038443	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11038444	0.96[EUR][1000 genomes]
rs11038450	0.98[EUR][1000 genomes]
rs11038451	0.98[EUR][1000 genomes]
rs11038455	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038456	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038457	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038458	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038459	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038461	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038462	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038465	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038466	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038467	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038469	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038471	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038472	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038473	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038474	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038475	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038477	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038479	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038481	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038482	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038483	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038485	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038486	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038487	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038491	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038492	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038493	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038494	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038495	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038496	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038497	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038498	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038510	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038515	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038516	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038518	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038520	0.91[EUR][1000 genomes]
rs11038522	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038525	0.87[CEU][hapmap]
rs11038528	0.87[CEU][hapmap]
rs11038543	0.85[CEU][hapmap]
rs11038549	0.87[CEU][hapmap]
rs11038550	0.87[CEU][hapmap]
rs11038551	0.87[CEU][hapmap]
rs11038552	1.00[CEU][hapmap]
rs1107209	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11599949	0.86[EUR][1000 genomes]
rs11599993	0.86[EUR][1000 genomes]
rs11601006	0.88[EUR][1000 genomes]
rs11601410	0.88[EUR][1000 genomes]
rs11604510	0.88[EUR][1000 genomes]
rs12278000	0.88[EUR][1000 genomes]
rs12360696	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12361372	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12363740	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12364278	0.98[EUR][1000 genomes]
rs12364661	0.98[EUR][1000 genomes]
rs12365374	0.88[EUR][1000 genomes]
rs12365430	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12365455	0.88[EUR][1000 genomes]
rs12365467	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12365982	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12366014	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1488668	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1488669	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1488670	1.00[EUR][1000 genomes]
rs17723819	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17724032	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17724240	0.87[CEU][hapmap]
rs17785901	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17786039	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17786178	0.87[CEU][hapmap]
rs1844150	0.98[EUR][1000 genomes]
rs2044877	0.90[EUR][1000 genomes]
rs72893316	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72893332	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72893337	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72893356	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72897413	0.88[EUR][1000 genomes]
rs72897414	0.88[EUR][1000 genomes]
rs72897422	0.88[EUR][1000 genomes]
rs72897428	0.88[EUR][1000 genomes]
rs72897458	0.88[EUR][1000 genomes]
rs72897475	0.95[EUR][1000 genomes]
rs72899452	0.85[EUR][1000 genomes]
rs72899480	0.96[EUR][1000 genomes]
rs72899488	0.98[EUR][1000 genomes]
rs72901403	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901422	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901426	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901447	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901450	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901459	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901500	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72903035	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72903086	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72903094	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72905021	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72905025	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72905092	1.00[EUR][1000 genomes]
rs72905093	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906922	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906947	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs971897	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45521200-45524400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:45521600-45523600	Enhancers	Brain Germinal Matrix	brain
3	chr11:45521600-45524200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:45521600-45524200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:45521600-45524200	Enhancers	Fetal Muscle Leg	muscle
6	chr11:45521800-45523800	Enhancers	Fetal Brain Female	brain
7	chr11:45522000-45523800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:45522200-45523800	Enhancers	Fetal Brain Male	brain
9	chr11:45522200-45523800	Enhancers	Right Atrium	heart
10	chr11:45522400-45523600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:45522400-45523800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:45522400-45524400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:45522400-45524400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:45522600-45523200	Enhancers	Fetal Kidney	kidney
15	chr11:45522600-45524000	Enhancers	Fetal Stomach	stomach
16	chr11:45522800-45523800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:45522800-45524000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:45523000-45523200	Flanking Bivalent TSS/Enh	HepG2	liver
19	chr11:45523000-45523400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:45523000-45523600	Enhancers	Fetal Lung	lung
21	chr11:45523000-45523800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:45523000-45524200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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