Variant report

Variant	rs11599949
Chromosome Location	chr11:45363252-45363253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10160472	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10160502	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10160694	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10160834	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10501315	0.86[EUR][1000 genomes]
rs10838454	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10838455	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10838479	0.86[EUR][1000 genomes]
rs11038403	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038405	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038406	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11038411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038417	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038420	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038423	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038424	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038426	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038427	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038429	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038430	0.93[AMR][1000 genomes]
rs11038431	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11038432	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11038433	0.92[EUR][1000 genomes]
rs11038434	0.90[EUR][1000 genomes]
rs11038435	0.90[EUR][1000 genomes]
rs11038437	0.90[EUR][1000 genomes]
rs11038442	0.90[EUR][1000 genomes]
rs11038443	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11038444	0.90[EUR][1000 genomes]
rs11038450	0.88[EUR][1000 genomes]
rs11038451	0.88[EUR][1000 genomes]
rs11038455	0.88[EUR][1000 genomes]
rs11038456	0.88[EUR][1000 genomes]
rs11038457	0.88[EUR][1000 genomes]
rs11038458	0.88[EUR][1000 genomes]
rs11038459	0.86[EUR][1000 genomes]
rs11038461	0.85[EUR][1000 genomes]
rs11038462	0.88[EUR][1000 genomes]
rs11038465	0.88[EUR][1000 genomes]
rs11038466	0.88[EUR][1000 genomes]
rs11038467	0.88[EUR][1000 genomes]
rs11038469	0.88[EUR][1000 genomes]
rs11038471	0.86[EUR][1000 genomes]
rs11038472	0.85[EUR][1000 genomes]
rs11038473	0.88[EUR][1000 genomes]
rs11038474	0.88[EUR][1000 genomes]
rs11038475	0.88[EUR][1000 genomes]
rs11038477	0.88[EUR][1000 genomes]
rs11038479	0.88[EUR][1000 genomes]
rs11038481	0.88[EUR][1000 genomes]
rs11038482	0.88[EUR][1000 genomes]
rs11038483	0.86[EUR][1000 genomes]
rs11038485	0.85[EUR][1000 genomes]
rs11038486	0.86[EUR][1000 genomes]
rs11038487	0.86[EUR][1000 genomes]
rs11038491	0.82[EUR][1000 genomes]
rs11038492	0.86[EUR][1000 genomes]
rs11038493	0.86[EUR][1000 genomes]
rs11038494	0.86[EUR][1000 genomes]
rs11038495	0.86[EUR][1000 genomes]
rs11038496	0.86[EUR][1000 genomes]
rs11038497	0.86[EUR][1000 genomes]
rs11038498	0.86[EUR][1000 genomes]
rs11038522	1.00[CEU][hapmap]
rs1107209	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11599993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11601006	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11601410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11604510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12278000	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12360696	1.00[CEU][hapmap]
rs12361372	0.88[EUR][1000 genomes]
rs12363740	0.85[EUR][1000 genomes]
rs12364278	0.88[EUR][1000 genomes]
rs12364661	0.88[EUR][1000 genomes]
rs12365374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12365430	0.88[EUR][1000 genomes]
rs12365455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12365467	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12365982	0.86[EUR][1000 genomes]
rs12366014	1.00[CEU][hapmap]
rs1488668	0.86[EUR][1000 genomes]
rs1488669	0.86[EUR][1000 genomes]
rs1488670	0.86[EUR][1000 genomes]
rs17723819	0.88[EUR][1000 genomes]
rs17724032	0.86[EUR][1000 genomes]
rs17724086	0.86[EUR][1000 genomes]
rs17785901	0.86[EUR][1000 genomes]
rs17786039	1.00[CEU][hapmap]
rs1844150	0.88[EUR][1000 genomes]
rs2044877	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72897413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897428	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897458	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72897475	0.92[EUR][1000 genomes]
rs72899480	0.90[EUR][1000 genomes]
rs72899488	0.88[EUR][1000 genomes]
rs72901403	0.88[EUR][1000 genomes]
rs72901422	0.88[EUR][1000 genomes]
rs72901426	0.88[EUR][1000 genomes]
rs72901447	0.88[EUR][1000 genomes]
rs72901450	0.88[EUR][1000 genomes]
rs72901459	0.88[EUR][1000 genomes]
rs72901500	0.88[EUR][1000 genomes]
rs72903035	0.88[EUR][1000 genomes]
rs72903086	0.88[EUR][1000 genomes]
rs72903094	0.88[EUR][1000 genomes]
rs72905021	0.86[EUR][1000 genomes]
rs72905025	0.86[EUR][1000 genomes]
rs72905092	0.86[EUR][1000 genomes]
rs72905093	0.86[EUR][1000 genomes]
rs72906922	0.86[EUR][1000 genomes]
rs72906947	0.83[EUR][1000 genomes]
rs971897	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45361200-45364400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:45361800-45364000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:45361800-45364600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:45362000-45363800	Weak transcription	Ovary	ovary
5	chr11:45362000-45364200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:45362200-45363400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:45362200-45363400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:45362200-45363400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:45362200-45364000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:45362200-45364000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:45362200-45364000	Weak transcription	Fetal Stomach	stomach
12	chr11:45362200-45364200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:45362200-45365000	Weak transcription	Right Atrium	heart
14	chr11:45362200-45365200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:45362200-45365200	Weak transcription	Fetal Heart	heart
16	chr11:45362200-45367200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:45362200-45368200	Weak transcription	Fetal Brain Female	brain
18	chr11:45362200-45368600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:45362200-45376400	Weak transcription	Brain Germinal Matrix	brain
20	chr11:45362400-45367000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:45362800-45363400	Enhancers	Fetal Brain Male	brain
22	chr11:45362800-45366400	Weak transcription	Fetal Lung	lung
23	chr11:45363000-45363600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr11:45363200-45364000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:45363200-45365000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:45363200-45366800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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