Variant report

Variant	rs12365467
Chromosome Location	chr11:45391124-45391125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45382525..45384893-chr11:45390829..45392427,2	MCF-7	breast:

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10160472	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10160502	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10160694	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10160834	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501315	0.88[EUR][1000 genomes]
rs10838454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10838455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10838479	0.88[EUR][1000 genomes]
rs11038403	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038405	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038406	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038417	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038423	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038424	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038426	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038427	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038429	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11038430	0.93[AMR][1000 genomes]
rs11038431	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038432	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038433	0.93[EUR][1000 genomes]
rs11038434	0.91[EUR][1000 genomes]
rs11038435	0.91[EUR][1000 genomes]
rs11038437	0.91[EUR][1000 genomes]
rs11038442	0.91[EUR][1000 genomes]
rs11038443	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11038444	0.91[EUR][1000 genomes]
rs11038450	0.90[EUR][1000 genomes]
rs11038451	0.90[EUR][1000 genomes]
rs11038455	0.90[EUR][1000 genomes]
rs11038456	0.90[EUR][1000 genomes]
rs11038457	0.90[EUR][1000 genomes]
rs11038458	0.90[EUR][1000 genomes]
rs11038459	0.88[EUR][1000 genomes]
rs11038461	0.86[EUR][1000 genomes]
rs11038462	0.90[EUR][1000 genomes]
rs11038465	0.90[EUR][1000 genomes]
rs11038466	0.90[EUR][1000 genomes]
rs11038467	0.90[EUR][1000 genomes]
rs11038469	0.90[EUR][1000 genomes]
rs11038471	0.88[EUR][1000 genomes]
rs11038472	0.86[EUR][1000 genomes]
rs11038473	0.90[EUR][1000 genomes]
rs11038474	0.90[EUR][1000 genomes]
rs11038475	0.90[EUR][1000 genomes]
rs11038477	0.90[EUR][1000 genomes]
rs11038479	0.90[EUR][1000 genomes]
rs11038481	0.90[EUR][1000 genomes]
rs11038482	0.90[EUR][1000 genomes]
rs11038483	0.88[EUR][1000 genomes]
rs11038485	0.86[EUR][1000 genomes]
rs11038486	0.88[EUR][1000 genomes]
rs11038487	0.88[EUR][1000 genomes]
rs11038491	0.83[EUR][1000 genomes]
rs11038492	0.88[EUR][1000 genomes]
rs11038493	0.88[EUR][1000 genomes]
rs11038494	0.88[EUR][1000 genomes]
rs11038495	0.88[EUR][1000 genomes]
rs11038496	0.88[EUR][1000 genomes]
rs11038497	0.88[EUR][1000 genomes]
rs11038498	0.88[EUR][1000 genomes]
rs11038522	1.00[CEU][hapmap]
rs11038525	0.87[CEU][hapmap]
rs11038528	0.87[CEU][hapmap]
rs11038543	0.85[CEU][hapmap]
rs1107209	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11599949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11599993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11601006	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11601410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12360696	1.00[CEU][hapmap]
rs12361372	0.90[EUR][1000 genomes]
rs12363740	0.86[EUR][1000 genomes]
rs12364278	0.90[EUR][1000 genomes]
rs12364661	0.90[EUR][1000 genomes]
rs12365374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12365430	0.90[EUR][1000 genomes]
rs12365455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12365982	0.88[EUR][1000 genomes]
rs12366014	1.00[CEU][hapmap]
rs1488668	0.88[EUR][1000 genomes]
rs1488669	0.88[EUR][1000 genomes]
rs1488670	0.88[EUR][1000 genomes]
rs17723819	0.90[EUR][1000 genomes]
rs17724032	0.88[EUR][1000 genomes]
rs17724086	0.88[EUR][1000 genomes]
rs17724240	0.87[CEU][hapmap]
rs17785901	0.88[EUR][1000 genomes]
rs17786039	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17786178	0.87[CEU][hapmap]
rs1844150	0.90[EUR][1000 genomes]
rs2044877	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72893316	0.81[EUR][1000 genomes]
rs72897413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897458	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897475	0.93[EUR][1000 genomes]
rs72899452	0.81[EUR][1000 genomes]
rs72899480	0.91[EUR][1000 genomes]
rs72899488	0.90[EUR][1000 genomes]
rs72901403	0.90[EUR][1000 genomes]
rs72901422	0.90[EUR][1000 genomes]
rs72901426	0.90[EUR][1000 genomes]
rs72901447	0.90[EUR][1000 genomes]
rs72901450	0.90[EUR][1000 genomes]
rs72901459	0.90[EUR][1000 genomes]
rs72901500	0.90[EUR][1000 genomes]
rs72903035	0.90[EUR][1000 genomes]
rs72903086	0.90[EUR][1000 genomes]
rs72903094	0.90[EUR][1000 genomes]
rs72905021	0.88[EUR][1000 genomes]
rs72905025	0.88[EUR][1000 genomes]
rs72905092	0.88[EUR][1000 genomes]
rs72905093	0.88[EUR][1000 genomes]
rs72906922	0.88[EUR][1000 genomes]
rs72906947	0.85[EUR][1000 genomes]
rs971897	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45388000-45392200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:45388400-45392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:45388400-45395800	Weak transcription	Liver	Liver
4	chr11:45388800-45392600	Weak transcription	Brain Anterior Caudate	brain
5	chr11:45389000-45392200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:45389000-45392600	Weak transcription	Spleen	Spleen
7	chr11:45389400-45392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:45389600-45392600	Weak transcription	Lung	lung
9	chr11:45390800-45391200	Enhancers	Brain Germinal Matrix	brain
10	chr11:45391000-45391200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr11:45391000-45391200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr11:45391000-45391200	Bivalent Enhancer	Fetal Intestine Small	intestine
13	chr11:45391000-45391200	Bivalent Enhancer	Fetal Stomach	stomach
14	chr11:45391000-45391200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
15	chr11:45391000-45391400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:45391000-45391400	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:45391000-45391400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr11:45391000-45391400	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr11:45391000-45391600	Enhancers	Ovary	ovary
20	chr11:45391000-45391800	Enhancers	Fetal Brain Male	brain
21	chr11:45391000-45391800	Enhancers	Fetal Brain Female	brain

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