Variant report

Variant	rs12365374
Chromosome Location	chr11:45366065-45366066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM11-8	chr11:45366003-45366635	ucscGeneNc_uc001myr_1

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10160472	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10160502	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10160694	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10160834	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501315	0.88[EUR][1000 genomes]
rs10838454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10838455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10838479	0.88[EUR][1000 genomes]
rs11038403	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038405	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038406	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038417	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038423	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038424	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038426	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038427	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038429	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11038430	0.93[AMR][1000 genomes]
rs11038431	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038432	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038433	0.93[EUR][1000 genomes]
rs11038434	0.91[EUR][1000 genomes]
rs11038435	0.91[EUR][1000 genomes]
rs11038437	0.91[EUR][1000 genomes]
rs11038442	0.91[EUR][1000 genomes]
rs11038443	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11038444	0.91[EUR][1000 genomes]
rs11038450	0.90[EUR][1000 genomes]
rs11038451	0.90[EUR][1000 genomes]
rs11038455	0.90[EUR][1000 genomes]
rs11038456	0.90[EUR][1000 genomes]
rs11038457	0.90[EUR][1000 genomes]
rs11038458	0.90[EUR][1000 genomes]
rs11038459	0.88[EUR][1000 genomes]
rs11038461	0.86[EUR][1000 genomes]
rs11038462	0.90[EUR][1000 genomes]
rs11038465	0.90[EUR][1000 genomes]
rs11038466	0.90[EUR][1000 genomes]
rs11038467	0.90[EUR][1000 genomes]
rs11038469	0.90[EUR][1000 genomes]
rs11038471	0.88[EUR][1000 genomes]
rs11038472	0.86[EUR][1000 genomes]
rs11038473	0.90[EUR][1000 genomes]
rs11038474	0.90[EUR][1000 genomes]
rs11038475	0.90[EUR][1000 genomes]
rs11038477	0.90[EUR][1000 genomes]
rs11038479	0.90[EUR][1000 genomes]
rs11038481	0.90[EUR][1000 genomes]
rs11038482	0.90[EUR][1000 genomes]
rs11038483	0.88[EUR][1000 genomes]
rs11038485	0.86[EUR][1000 genomes]
rs11038486	0.88[EUR][1000 genomes]
rs11038487	0.88[EUR][1000 genomes]
rs11038491	0.83[EUR][1000 genomes]
rs11038492	0.88[EUR][1000 genomes]
rs11038493	0.88[EUR][1000 genomes]
rs11038494	0.88[EUR][1000 genomes]
rs11038495	0.88[EUR][1000 genomes]
rs11038496	0.88[EUR][1000 genomes]
rs11038497	0.88[EUR][1000 genomes]
rs11038498	0.88[EUR][1000 genomes]
rs11038522	1.00[CEU][hapmap]
rs11038525	0.87[CEU][hapmap]
rs1107209	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11599949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11599993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11601006	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11601410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12360696	1.00[CEU][hapmap]
rs12361372	0.90[EUR][1000 genomes]
rs12363740	0.86[EUR][1000 genomes]
rs12364278	0.90[EUR][1000 genomes]
rs12364661	0.90[EUR][1000 genomes]
rs12365430	0.90[EUR][1000 genomes]
rs12365455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12365467	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12365982	0.88[EUR][1000 genomes]
rs12366014	1.00[CEU][hapmap]
rs1488668	0.88[EUR][1000 genomes]
rs1488669	0.88[EUR][1000 genomes]
rs1488670	0.88[EUR][1000 genomes]
rs17723819	0.90[EUR][1000 genomes]
rs17724032	0.88[EUR][1000 genomes]
rs17724086	0.88[EUR][1000 genomes]
rs17785901	0.88[EUR][1000 genomes]
rs17786039	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1844150	0.90[EUR][1000 genomes]
rs2044877	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72893316	0.81[EUR][1000 genomes]
rs72897413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897458	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897475	0.93[EUR][1000 genomes]
rs72899452	0.81[EUR][1000 genomes]
rs72899480	0.91[EUR][1000 genomes]
rs72899488	0.90[EUR][1000 genomes]
rs72901403	0.90[EUR][1000 genomes]
rs72901422	0.90[EUR][1000 genomes]
rs72901426	0.90[EUR][1000 genomes]
rs72901447	0.90[EUR][1000 genomes]
rs72901450	0.90[EUR][1000 genomes]
rs72901459	0.90[EUR][1000 genomes]
rs72901500	0.90[EUR][1000 genomes]
rs72903035	0.90[EUR][1000 genomes]
rs72903086	0.90[EUR][1000 genomes]
rs72903094	0.90[EUR][1000 genomes]
rs72905021	0.88[EUR][1000 genomes]
rs72905025	0.88[EUR][1000 genomes]
rs72905092	0.88[EUR][1000 genomes]
rs72905093	0.88[EUR][1000 genomes]
rs72906922	0.88[EUR][1000 genomes]
rs72906947	0.85[EUR][1000 genomes]
rs971897	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45362200-45367200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:45362200-45368200	Weak transcription	Fetal Brain Female	brain
3	chr11:45362200-45368600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:45362200-45376400	Weak transcription	Brain Germinal Matrix	brain
5	chr11:45362400-45367000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:45362800-45366400	Weak transcription	Fetal Lung	lung
7	chr11:45363200-45366800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:45363400-45366600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:45363400-45367200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:45364000-45366600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:45364000-45366800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:45364200-45367200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:45364200-45368400	Weak transcription	Fetal Stomach	stomach
14	chr11:45364200-45369000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:45365000-45366600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:45365200-45366200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:45365800-45366800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:45365800-45367600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:45365800-45369000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:45366000-45366800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:45366000-45368400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:45366000-45368400	Weak transcription	Fetal Heart	heart

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