Variant report

Variant	rs72903094
Chromosome Location	chr11:45490136-45490137
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45488928..45491799-chr11:45499430..45501355,2	K562	blood:
2	chr11:45481521..45483456-chr11:45488873..45491103,2	MCF-7	breast:

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10160472	0.90[EUR][1000 genomes]
rs10160502	0.90[EUR][1000 genomes]
rs10160694	0.90[EUR][1000 genomes]
rs10160834	0.90[EUR][1000 genomes]
rs10501315	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10838454	0.90[EUR][1000 genomes]
rs10838455	0.90[EUR][1000 genomes]
rs10838479	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038403	0.84[EUR][1000 genomes]
rs11038404	0.88[EUR][1000 genomes]
rs11038405	0.88[EUR][1000 genomes]
rs11038406	0.90[EUR][1000 genomes]
rs11038409	0.88[EUR][1000 genomes]
rs11038411	0.90[EUR][1000 genomes]
rs11038417	0.90[EUR][1000 genomes]
rs11038420	0.90[EUR][1000 genomes]
rs11038423	0.90[EUR][1000 genomes]
rs11038424	0.90[EUR][1000 genomes]
rs11038426	0.90[EUR][1000 genomes]
rs11038427	0.90[EUR][1000 genomes]
rs11038429	0.93[EUR][1000 genomes]
rs11038431	0.96[EUR][1000 genomes]
rs11038432	0.96[EUR][1000 genomes]
rs11038433	0.96[EUR][1000 genomes]
rs11038434	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038435	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038436	0.83[AMR][1000 genomes]
rs11038437	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038442	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038443	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038444	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038450	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038451	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038459	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038461	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038471	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038472	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038483	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038485	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038486	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038487	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038491	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038492	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038493	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038494	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038495	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038496	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038497	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038498	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038510	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11038515	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038516	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038518	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038520	0.89[EUR][1000 genomes]
rs11038522	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1107209	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11599949	0.88[EUR][1000 genomes]
rs11599993	0.88[EUR][1000 genomes]
rs11601006	0.90[EUR][1000 genomes]
rs11601410	0.90[EUR][1000 genomes]
rs11604510	0.90[EUR][1000 genomes]
rs12278000	0.90[EUR][1000 genomes]
rs12360696	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12361372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12363740	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12364278	1.00[EUR][1000 genomes]
rs12364661	1.00[EUR][1000 genomes]
rs12365374	0.90[EUR][1000 genomes]
rs12365430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12365455	0.90[EUR][1000 genomes]
rs12365467	0.90[EUR][1000 genomes]
rs12365982	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12366014	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1488668	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1488669	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1488670	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17723819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17724032	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17724086	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17785901	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17786039	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1844150	1.00[EUR][1000 genomes]
rs2044877	0.91[EUR][1000 genomes]
rs72893316	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72893332	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72893337	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72893356	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72897413	0.90[EUR][1000 genomes]
rs72897414	0.90[EUR][1000 genomes]
rs72897422	0.90[EUR][1000 genomes]
rs72897428	0.90[EUR][1000 genomes]
rs72897458	0.90[EUR][1000 genomes]
rs72897475	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72899452	0.87[EUR][1000 genomes]
rs72899480	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72899488	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72903035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72903086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72905021	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72905025	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72905092	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72905093	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72906922	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72906947	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs971897	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1053919	chr11:45457920-45506491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv541027	chr11:45457920-45506491	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45485400-45492200	Weak transcription	Pancreas	Pancrea
2	chr11:45489400-45490200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45489400-45490200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
4	chr11:45489400-45490200	Enhancers	Fetal Muscle Trunk	muscle
5	chr11:45489400-45490400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:45489400-45490400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:45489400-45490400	Enhancers	Fetal Stomach	stomach
8	chr11:45489600-45490200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:45489600-45490200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:45489600-45490200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:45489600-45490200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:45489600-45490200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:45489600-45490200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:45489600-45490200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:45489600-45490200	Enhancers	Fetal Thymus	thymus
16	chr11:45489600-45490400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:45489600-45490400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:45489600-45490400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:45489600-45490400	Enhancers	Fetal Muscle Leg	muscle
20	chr11:45489600-45490400	Enhancers	HUVEC	blood vessel
21	chr11:45489600-45490400	Enhancers	Osteobl	bone
22	chr11:45489600-45491600	Enhancers	Spleen	Spleen
23	chr11:45489600-45493000	Enhancers	Adipose Nuclei	Adipose
24	chr11:45489800-45490200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:45489800-45490200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:45489800-45490200	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr11:45489800-45490200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
28	chr11:45489800-45490400	Enhancers	Fetal Heart	heart
29	chr11:45489800-45490400	Enhancers	Fetal Kidney	kidney
30	chr11:45489800-45490400	Enhancers	Fetal Lung	lung
31	chr11:45489800-45490600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:45490000-45490200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:45490000-45490400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:45490000-45490400	Enhancers	Right Ventricle	heart
35	chr11:45490000-45491000	Weak transcription	Ovary	ovary

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