Variant report

Variant	rs11038424
Chromosome Location	chr11:45399905-45399906
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10160472	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10160502	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10160694	1.00[EUR][1000 genomes]
rs10160834	1.00[EUR][1000 genomes]
rs10501315	0.88[EUR][1000 genomes]
rs10838454	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10838455	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10838479	0.88[EUR][1000 genomes]
rs11038403	0.93[EUR][1000 genomes]
rs11038404	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038405	0.98[EUR][1000 genomes]
rs11038406	1.00[EUR][1000 genomes]
rs11038409	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038411	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038417	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038420	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11038430	1.00[AMR][1000 genomes]
rs11038431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038433	0.93[EUR][1000 genomes]
rs11038434	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038435	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038436	0.85[AMR][1000 genomes]
rs11038437	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038442	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038443	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038444	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11038450	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11038451	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11038455	0.90[EUR][1000 genomes]
rs11038456	0.90[EUR][1000 genomes]
rs11038457	0.90[EUR][1000 genomes]
rs11038458	0.90[EUR][1000 genomes]
rs11038459	0.88[EUR][1000 genomes]
rs11038461	0.86[EUR][1000 genomes]
rs11038462	0.90[EUR][1000 genomes]
rs11038465	0.90[EUR][1000 genomes]
rs11038466	0.90[EUR][1000 genomes]
rs11038467	0.90[EUR][1000 genomes]
rs11038469	0.90[EUR][1000 genomes]
rs11038471	0.88[EUR][1000 genomes]
rs11038472	0.86[EUR][1000 genomes]
rs11038473	0.90[EUR][1000 genomes]
rs11038474	0.90[EUR][1000 genomes]
rs11038475	0.90[EUR][1000 genomes]
rs11038477	0.90[EUR][1000 genomes]
rs11038479	0.90[EUR][1000 genomes]
rs11038481	0.90[EUR][1000 genomes]
rs11038482	0.90[EUR][1000 genomes]
rs11038483	0.88[EUR][1000 genomes]
rs11038485	0.86[EUR][1000 genomes]
rs11038486	0.88[EUR][1000 genomes]
rs11038487	0.88[EUR][1000 genomes]
rs11038491	0.83[EUR][1000 genomes]
rs11038492	0.88[EUR][1000 genomes]
rs11038493	0.88[EUR][1000 genomes]
rs11038494	0.88[EUR][1000 genomes]
rs11038495	0.88[EUR][1000 genomes]
rs11038496	0.88[EUR][1000 genomes]
rs11038497	0.88[EUR][1000 genomes]
rs11038498	0.88[EUR][1000 genomes]
rs11038522	1.00[CEU][hapmap]
rs11038525	0.85[CEU][hapmap]
rs11038528	0.85[CEU][hapmap]
rs11038543	0.82[CEU][hapmap]
rs1107209	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11599949	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11599993	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11601006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11601410	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604510	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278000	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12360696	1.00[CEU][hapmap]
rs12361372	0.90[EUR][1000 genomes]
rs12363740	0.86[EUR][1000 genomes]
rs12364278	0.90[EUR][1000 genomes]
rs12364661	0.90[EUR][1000 genomes]
rs12365374	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12365430	0.90[EUR][1000 genomes]
rs12365455	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12365467	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12365982	0.88[EUR][1000 genomes]
rs12366014	1.00[CEU][hapmap]
rs1488668	0.88[EUR][1000 genomes]
rs1488669	0.88[EUR][1000 genomes]
rs1488670	0.88[EUR][1000 genomes]
rs17723819	0.90[EUR][1000 genomes]
rs17724032	0.88[EUR][1000 genomes]
rs17724086	0.88[EUR][1000 genomes]
rs17724240	0.85[CEU][hapmap]
rs17785901	0.88[EUR][1000 genomes]
rs17786039	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17786178	0.85[CEU][hapmap]
rs1844150	0.90[EUR][1000 genomes]
rs2044877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72893316	0.81[EUR][1000 genomes]
rs72897413	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897414	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897422	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897428	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897458	1.00[EUR][1000 genomes]
rs72897475	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72899452	0.81[EUR][1000 genomes]
rs72899480	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72899488	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72901403	0.90[EUR][1000 genomes]
rs72901422	0.90[EUR][1000 genomes]
rs72901426	0.90[EUR][1000 genomes]
rs72901447	0.90[EUR][1000 genomes]
rs72901450	0.90[EUR][1000 genomes]
rs72901459	0.90[EUR][1000 genomes]
rs72901500	0.90[EUR][1000 genomes]
rs72903035	0.90[EUR][1000 genomes]
rs72903086	0.90[EUR][1000 genomes]
rs72903094	0.90[EUR][1000 genomes]
rs72905021	0.88[EUR][1000 genomes]
rs72905025	0.88[EUR][1000 genomes]
rs72905092	0.88[EUR][1000 genomes]
rs72905093	0.88[EUR][1000 genomes]
rs72906922	0.88[EUR][1000 genomes]
rs72906947	0.85[EUR][1000 genomes]
rs971897	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45393800-45406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45394200-45406200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:45394400-45403000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45396600-45404400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:45397000-45402200	Weak transcription	Fetal Thymus	thymus
6	chr11:45397000-45403600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:45397400-45404600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:45397600-45403800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:45399600-45400400	Enhancers	Fetal Stomach	stomach

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