Variant report

Variant	rs11038543
Chromosome Location	chr11:45582751-45582752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45582261..45584715-chr11:45587319..45589536,2	K562	blood:
2	chr11:45167444..45169774-chr11:45581988..45584250,2	MCF-7	breast:
3	chr11:45582261..45584351-chr11:45587015..45588819,2	K562	blood:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10742762	0.85[CEU][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10742763	1.00[ASN][1000 genomes]
rs10769161	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs10769162	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs10838493	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038417	0.82[CEU][hapmap]
rs11038522	0.85[CEU][hapmap]
rs11038524	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038525	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038528	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038530	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038531	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038533	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038538	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038539	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038544	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038549	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038550	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038551	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038552	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038559	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038560	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038563	1.00[ASN][1000 genomes]
rs11038566	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038567	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038582	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038596	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038601	1.00[ASN][1000 genomes]
rs11038603	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038615	1.00[ASN][1000 genomes]
rs1107209	0.85[CEU][hapmap]
rs12360696	1.00[CEU][hapmap]
rs12362568	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	1.00[ASN][1000 genomes]
rs12363116	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12363231	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12365467	0.85[CEU][hapmap]
rs12365703	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366014	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1387058	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447573	0.91[AMR][1000 genomes]
rs1488677	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562461	1.00[ASN][1000 genomes]
rs17724240	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724446	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17786039	0.85[CEU][hapmap]
rs17786178	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786436	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	1.00[ASN][1000 genomes]
rs275597	1.00[ASN][1000 genomes]
rs45627537	1.00[ASN][1000 genomes]
rs4756007	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4756013	1.00[ASN][1000 genomes]
rs4756014	1.00[ASN][1000 genomes]
rs6485637	1.00[ASN][1000 genomes]
rs7104214	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	0.85[CEU][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7116428	1.00[ASN][1000 genomes]
rs7121818	0.85[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895236	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895273	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896754	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72896789	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72898653	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72898676	1.00[ASN][1000 genomes]
rs72899255	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899271	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899280	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904957	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904980	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904984	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904993	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904994	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904997	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs895718	1.00[ASN][1000 genomes]
rs901907	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45580600-45584200	Enhancers	Fetal Muscle Leg	muscle
2	chr11:45581200-45583200	Enhancers	Fetal Stomach	stomach
3	chr11:45581400-45583200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:45581400-45584000	Enhancers	Fetal Brain Male	brain
5	chr11:45581800-45583000	Enhancers	HSMMtube	muscle
6	chr11:45582000-45582800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:45582000-45583000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:45582000-45583400	Enhancers	Brain Germinal Matrix	brain
9	chr11:45582200-45583000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:45582200-45584800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:45582200-45584800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:45582200-45585000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:45582200-45585200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:45582200-45585200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:45582400-45582800	Enhancers	Brain Angular Gyrus	brain
16	chr11:45582600-45582800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:45582600-45583600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:45582600-45584200	Enhancers	Fetal Muscle Trunk	muscle
19	chr11:45582600-45584800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:45582600-45585200	Weak transcription	Right Atrium	heart
21	chr11:45582600-45588000	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links