Variant report

Variant	rs11038603
Chromosome Location	chr11:45667039-45667040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45659181..45661642-chr11:45665618..45668117,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10742762	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742763	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769161	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769162	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838493	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038524	1.00[ASN][1000 genomes]
rs11038525	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038528	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038530	1.00[ASN][1000 genomes]
rs11038531	1.00[ASN][1000 genomes]
rs11038533	1.00[ASN][1000 genomes]
rs11038538	1.00[ASN][1000 genomes]
rs11038539	1.00[ASN][1000 genomes]
rs11038543	0.85[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038544	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038549	0.87[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038550	0.87[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038551	0.87[CEU][hapmap];0.91[AMR][1000 genomes]
rs11038552	0.82[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038559	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038560	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038563	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038566	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038567	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038582	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038596	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038601	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038615	1.00[ASN][1000 genomes]
rs12360696	0.87[CEU][hapmap]
rs12362568	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363116	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363231	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365703	1.00[ASN][1000 genomes]
rs12366014	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs1387058	1.00[ASN][1000 genomes]
rs1447573	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1488677	1.00[ASN][1000 genomes]
rs1562461	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724240	0.87[CEU][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs17724446	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786178	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs17786436	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs275597	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45627537	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756007	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756011	1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4756013	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756014	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485637	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104214	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116428	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121818	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	1.00[ASN][1000 genomes]
rs72895236	1.00[ASN][1000 genomes]
rs72895273	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72896754	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896789	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898653	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898676	1.00[ASN][1000 genomes]
rs72899255	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899271	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899280	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904957	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904980	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904984	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904993	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904994	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904997	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895718	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901907	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45659200-45669400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45663600-45671200	Weak transcription	Spleen	Spleen
3	chr11:45665600-45667600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:45665600-45671000	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:45665600-45674400	Weak transcription	HMEC	breast
6	chr11:45665600-45680000	Weak transcription	Gastric	stomach
7	chr11:45665800-45667800	Weak transcription	NHEK	skin
8	chr11:45665800-45669400	Weak transcription	Left Ventricle	heart
9	chr11:45665800-45670600	Weak transcription	Fetal Brain Female	brain
10	chr11:45665800-45670600	Weak transcription	Right Ventricle	heart
11	chr11:45665800-45671200	Weak transcription	Brain Anterior Caudate	brain
12	chr11:45665800-45671800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:45666200-45671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:45666800-45667400	Weak transcription	HUVEC	blood vessel

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